C-TERMINAL DOMAIN OF MOUSE BRAIN TUBBY PROTEIN

Method: X-RAY DIFFRACTION D_max: 67.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1c8z
deposition_date	1999-07-30
title	C-TERMINAL DOMAIN OF MOUSE BRAIN TUBBY PROTEIN
keywords	;TUBBY FILLED-BARREL, BETA-BARREL, FILLED-BETA-ROLL, 12-STRANDED-BETA-BARREL, HELIX-FILLED-BARREL, OBESITY BLINDNESS, DEAFNESS, SIGNALING PROTEIN ;; SIGNALING PROTEIN
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	19.80 Å
rg_electron	18.33 Å
i0	16630000.00
molecular_weight	29567.0 kDa
excluded_volume	36620 Å³
envelope_volume	44156 Å³
shell_volume	19887 Å³
envelope_diameter	69.4 Å
shell_rg	24.97 Å
envelope_rg	18.78 Å
shape_rg	18.33 Å
total_rg	19.33 Å
total_atoms	2076
n_residues	265
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	67.4 Å
rg_real	19.67 Å
rg_real_error	0.65 Å
i0_real	1.6630e+07
i0_real_error	2.3170e+05
rg_reciprocal	19.69 Å
i0_reciprocal	16630000.0000
total_estimate	0.7637
solution_quality	GOOD a GOOD solution
n_peaks	4
r_peak_primary	26.6 Å
skewness	0.190
kurtosis	-0.269
angular_range	— – 0.4000 Å⁻¹
current_alpha	0.0000
highest_alpha	3557000.0000
n_real_points	72
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.658; Stabil: 0.983; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

▶

6. Citations (1)

▶

length_a	43.536 Å
length_b	51.023 Å
length_c	121.074 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.900 Å
resolution_low	8.000 Å
r_factor	0.2102
r_work	0.2102
r_free	0.2650

description	TUBBY PROTEIN
formula_weight	29996.2 kDa
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	2732

C-TERMINAL DOMAIN OF MOUSE BRAIN TUBBY PROTEIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	2

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	509

fit	/app/data/saxs_computation/c8/1c8z/1c8z.fit
pddf	/app/data/pr_computation/c8/1c8z/1c8z.pr.out
profile	/app/data/saxs_computation/c8/1c8z/1c8z.dat