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1cbv

;AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX ;

Method: X-RAY DIFFRACTION D_max: 81.4 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cbv
deposition_date	1993-03-16
title	;AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX ;
keywords	PROTEIN-DNA COMPLEX, SINGLE STRAND, IMMUNE SYSTEM-DNA COMPLEX; IMMUNE SYSTEM/DNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.50 Å
rg_electron	25.26 Å
i0	41857600.00
molecular_weight	48554.0 kDa
excluded_volume	60019 Å³
envelope_volume	75066 Å³
shell_volume	24981 Å³
envelope_diameter	83.5 Å
shell_rg	32.43 Å
envelope_rg	24.86 Å
shape_rg	25.24 Å
total_rg	26.12 Å
total_atoms	3408
n_residues	441
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	81.4 Å
rg_real	26.50 Å
rg_real_error	0.55 Å
i0_real	4.1860e+07
i0_real_error	6.3740e+05
rg_reciprocal	26.50 Å
i0_reciprocal	41860000.0000
total_estimate	0.9075
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	27.1 Å
skewness	0.262
kurtosis	-0.627
angular_range	— – 0.3000 Å⁻¹
current_alpha	0.0000
highest_alpha	5528000.0000
n_real_points	61
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.975; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.974; Smooth: 0.896

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	;DNA (5'-D(TPTP*T)-3') ;
formula_weight	867.6 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	D
atom_count	3408

TTT

Entity 2 polymer

description	PROTEIN (FAB (BV04-01) AUTOANTIBODY-LIGHT CHAIN)
formula_weight	24109.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L

DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090

Entity 3 polymer

description	PROTEIN (FAB (BV04-01) AUTOANTIBODY-HEAVY CHAIN)
formula_weight	23553.3 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

EVQPVETGGGLVQPKGSLKLSCAASGFSFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYCVRDQTGTAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090

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6. Citations (2)

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length_a	63.500 Å
length_b	99.200 Å
length_c	36.600 Å
angle_alpha	90.00 °
angle_beta	95.30 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.660 Å
resolution_low	6.000 Å
r_factor	0.1910
r_work	0.1910
r_free	—

fit	/app/data/saxs_computation/cb/1cbv/1cbv.fit
pddf	/app/data/pr_computation/cb/1cbv/1cbv.pr.out
profile	/app/data/saxs_computation/cb/1cbv/1cbv.dat

;AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)