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1ce7

MISTLETOE LECTIN I FROM VISCUM ALBUM

Method: X-RAY DIFFRACTION D_max: 84.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ce7
deposition_date	1999-03-18
title	MISTLETOE LECTIN I FROM VISCUM ALBUM
keywords	RIBOSOME-INACTIVATING PROTEIN TYPE II, RIBOSOME; RIBOSOME
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.75 Å
rg_electron	24.89 Å
i0	49064200.00
molecular_weight	53265.0 kDa
excluded_volume	66136 Å³
envelope_volume	78287 Å³
shell_volume	26896 Å³
envelope_diameter	86.0 Å
shell_rg	31.47 Å
envelope_rg	24.98 Å
shape_rg	24.89 Å
total_rg	25.58 Å
total_atoms	3748
n_residues	496
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	84.3 Å
rg_real	25.79 Å
rg_real_error	0.56 Å
i0_real	4.9060e+07
i0_real_error	6.4440e+05
rg_reciprocal	25.78 Å
i0_reciprocal	49060000.0000
total_estimate	0.8901
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.2 Å
skewness	0.393
kurtosis	-0.380
angular_range	— – 0.3100 Å⁻¹
current_alpha	0.0000
highest_alpha	9251000.0000
n_real_points	63
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.874; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.961

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	PROTEIN (RIBOSOME-INACTIVATING PROTEIN TYPE II)
formula_weight	25737.8 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3963

YERGDLDVTAQTTGAGYFSFITLLRDYVSSGSFSNAIPLLSQSGGGGEAGRFVLVELTNSGGDGITVAIDVTNLYVVAYQAGSQSYFLSGPGGRHGFTGTTRSSLPFNGSYPDLEQYGGQRKQIPLGIDQLIQSVTALKFPGSTRTGARSILILIQMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGVFNNPIALADPGGGVTLTNVRDVIASLAIMLFVC

Entity 2 polymer

description	PROTEIN (RIBOSOME-INACTIVATING PROTEIN TYPE II)
formula_weight	27072.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

CSASEPTVRIVGRNGMNVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFDCATAVGEATVWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFNDLCMESGGGSVTVETCSSGKADKWALYGDGSIRPEQNQAQCLTSGGDSVAGVNIVSCSGAASGQRWVFTNEGAILNLKNGLAMDVANPGGGRIIIYPATGKPNQMWLPVF

Entity 3 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	3

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	215

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6. Citations (1)

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length_a	107.648 Å
length_b	107.648 Å
length_c	311.278 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 65 2 2
int_tables_number	179
crystal_system	—

resolution	2.700 Å
resolution_low	8.000 Å
r_factor	—
r_work	0.2510
r_free	0.3190

fit	/app/data/saxs_computation/ce/1ce7/1ce7.fit
pddf	/app/data/pr_computation/ce/1ce7/1ce7.pr.out
profile	/app/data/saxs_computation/ce/1ce7/1ce7.dat

MISTLETOE LECTIN I FROM VISCUM ALBUM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)