SAXSdb — 1cf3

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1. Structure Basics

entry_id	1cf3
deposition_date	1999-03-23
title	GLUCOSE OXIDASE FROM APERGILLUS NIGER
keywords	OXIDOREDUCTASE(FLAVOPROTEIN); OXIDOREDUCTASE(FLAVOPROTEIN)
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.56 Å
rg_electron	23.47 Å
i0	73604200.00
molecular_weight	65339.0 kDa
excluded_volume	80816 Å³
envelope_volume	93768 Å³
shell_volume	31978 Å³
envelope_diameter	81.5 Å
shell_rg	31.92 Å
envelope_rg	23.86 Å
shape_rg	23.44 Å
total_rg	24.42 Å
total_atoms	4608
n_residues	581
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	78.5 Å
rg_real	24.43 Å
rg_real_error	0.34 Å
i0_real	7.3600e+07
i0_real_error	9.2890e+05
rg_reciprocal	24.47 Å
i0_reciprocal	73610000.0000
total_estimate	0.8907
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.9 Å
skewness	0.246
kurtosis	-0.343
angular_range	— – 0.3250 Å⁻¹
current_alpha	0.0000
highest_alpha	25570000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.860; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.996

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	PROTEIN (GLUCOSE OXIDASE)
formula_weight	63329.0 kDa
ec_number	1.1.3.4
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4917

SNGIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ

Entity 2 branched

description	;alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ;
formula_weight	910.8 kDa
src_method	man
entity_count	1

Entity 3 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	man
entity_count	3

Entity 4 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	309

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6. Citations (3)

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length_a	67.540 Å
length_b	67.540 Å
length_c	215.380 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 31 2 1
int_tables_number	152
crystal_system	—

resolution	1.900 Å
resolution_low	20.000 Å
r_factor	0.1900
r_work	0.1900
r_free	0.2400

fit	/app/data/saxs_computation/cf/1cf3/1cf3.fit
pddf	/app/data/pr_computation/cf/1cf3/1cf3.pr.out
profile	/app/data/saxs_computation/cf/1cf3/1cf3.dat

GLUCOSE OXIDASE FROM APERGILLUS NIGER

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction