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1cgm

;STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES ;

Method: FIBER DIFFRACTION D_max: 84.0 Å Quality: SUSPICIOUS

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cgm
deposition_date	1993-11-17
title	;STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES ;
keywords	VIRUS, Helical virus; VIRUS
method	FIBER DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.62 Å
rg_electron	21.34 Å
i0	6802650.00
molecular_weight	18310.0 kDa
excluded_volume	22605 Å³
envelope_volume	30588 Å³
shell_volume	13828 Å³
envelope_diameter	86.5 Å
shell_rg	25.19 Å
envelope_rg	22.23 Å
shape_rg	21.31 Å
total_rg	22.07 Å
total_atoms	1291
n_residues	163
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	84.0 Å
rg_real	22.06 Å
rg_real_error	0.96 Å
i0_real	6.8030e+06
i0_real_error	1.1850e+05
rg_reciprocal	21.98 Å
i0_reciprocal	6802000.0000
total_estimate	0.4619
solution_quality	SUSPICIOUS a SUSPICIOUS solution
n_peaks	2
r_peak_primary	18.5 Å
skewness	0.741
kurtosis	0.170
angular_range	— – 0.3700 Å⁻¹
current_alpha	0.0000
highest_alpha	1085000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.328; Stabil: 0.997; Sysdev: 0.281; Positv: 1.000; Valcen: 0.182; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	;RNA (5'-R(PGPAP*A)-3') ;
formula_weight	958.7 kDa
src_method	syn
entity_count	1

Polymer

type	polyribonucleotide
strand_id	I
atom_count	1296

GAA

Entity 2 polymer

description	CUCUMBER GREEN MOTTLE MOSAIC VIRUS
formula_weight	17303.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	E

XAYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFPDAGFYAFLNGPVLRPIFVSLLSSTDTRNRVIEVVDPSNPTTAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSKA

Source

organism	Cucumber green mottle mosaic virus
ncbi_taxonomy_id	12235

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	5

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6. Citations (6)

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length_a	1.000 Å
length_b	1.000 Å
length_c	70.800 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	49

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.400 Å
resolution_low	— Å
r_factor	0.0930
r_work	0.0930
r_free	—

fit	/app/data/saxs_computation/cg/1cgm/1cgm.fit
pddf	/app/data/pr_computation/cg/1cgm/1cgm.pr.out
profile	/app/data/saxs_computation/cg/1cgm/1cgm.dat

;STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Source

Entity 3 water

6. Citations (6)

7. Files & Curves (10)

Files (7)

Curves (3)