SAXSdb — 1cjy

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1. Structure Basics

entry_id	1cjy
deposition_date	1999-04-20
title	HUMAN CYTOSOLIC PHOSPHOLIPASE A2
keywords	PHOSPHOLIPASE, LIPID-BINDING, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	73.29 Å
rg_electron	73.64 Å
i0	245436000.00
molecular_weight	137150.0 kDa
excluded_volume	172930 Å³
envelope_volume	293370 Å³
shell_volume	32729 Å³
envelope_diameter	221.1 Å
shell_rg	80.37 Å
envelope_rg	67.99 Å
shape_rg	73.63 Å
total_rg	73.77 Å
total_atoms	9648
n_residues	1247
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	234.3 Å
rg_real	73.85 Å
rg_real_error	2.55 Å
i0_real	2.4540e+08
i0_real_error	5.9010e+06
rg_reciprocal	70.55 Å
i0_reciprocal	243700000.0000
total_estimate	0.5433
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	33.5 Å
skewness	0.115
kurtosis	-1.531
angular_range	— – 0.1050 Å⁻¹
current_alpha	0.0011
highest_alpha	4282000.0000
n_real_points	22
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.001; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.060; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	PROTEIN (CYTOSOLIC PHOSPHOLIPASE A2)
formula_weight	85309.7 kDa
ec_number	3.1.1.4
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	9706

MSFIDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARDVPVVAILGSGGGFRAMVGFSGVMKALYESGILDCATYVAGLSGSTWYMSTLYSHPDFPEKGPEEINEELMKNVSHNPLLLLTPQKVKRYVESLWKKKSSGQPVTFTDIFGMLIGETLIHNRMNTTLSSLKEKVNTAQCPLPLFTCLHVKPDVSELMFADWVEFSPYEIGMAKYGTFMAPDLFGSKFFMGTVVKKYEENPLHFLMGVWGSAFSILFNRVLGVSGSQSRGSTMEEELENITTKHIVSNDSSDSDDESHEPKGTENEDAGSDYQSDNQASWIHRMIMALVSDSALFNTREGRAGKVHNFMLGLNLNTSYPLSPLSDFATQDSFDDDELDAAVADPDEFERIYEPLDVKSKKIHVVDSGLTFNLPYPLILRPQRGVDLIISFDFSARPSDSSPPFKELLLAEKWAKMNKLPFPKIDPYVFDREGLKECYVFKPKNPDMEKDCPTIIHFVLANINFRKYKAPGVPRETEEEKEIADFDIFDDPESPFSTFNFQYPNQAFKRLHDLMHFNTLNNIDVIKEAMVESIEYRRQNPSRCSVSLSNVEARRFFNKEFLSKPKA

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 2 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
formula_weight	195.2 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	58

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6. Citations (1)

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length_a	153.590 Å
length_b	95.490 Å
length_c	139.130 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.500 Å
resolution_low	12.000 Å
r_factor	0.2290
r_work	0.2290
r_free	0.2980

fit	/app/data/saxs_computation/cj/1cjy/1cjy.fit
pddf	/app/data/pr_computation/cj/1cjy/1cjy.pr.out
profile	/app/data/saxs_computation/cj/1cjy/1cjy.dat

HUMAN CYTOSOLIC PHOSPHOLIPASE A2

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction