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1cly

IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER

Method: X-RAY DIFFRACTION D_max: 80.2 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cly
deposition_date	1995-03-15
title	IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
keywords	IMMUNOGLOBULIN, IMMUNOGLOBULIN C REGION, GLYCOPROTEIN, ANTIB; IMMUNOGLOBULIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.25 Å
rg_electron	24.24 Å
i0	38989600.00
molecular_weight	48224.0 kDa
excluded_volume	60289 Å³
envelope_volume	72861 Å³
shell_volume	25282 Å³
envelope_diameter	81.3 Å
shell_rg	31.18 Å
envelope_rg	23.97 Å
shape_rg	24.21 Å
total_rg	25.12 Å
total_atoms	3395
n_residues	436
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	80.2 Å
rg_real	25.22 Å
rg_real_error	0.51 Å
i0_real	3.8990e+07
i0_real_error	5.4250e+05
rg_reciprocal	25.23 Å
i0_reciprocal	38990000.0000
total_estimate	0.9072
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	28.0 Å
skewness	0.267
kurtosis	-0.516
angular_range	— – 0.3150 Å⁻¹
current_alpha	0.0000
highest_alpha	7105000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.943; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.978

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	IGG FAB (HUMAN IGG1, KAPPA)
formula_weight	24077.9 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L
atom_count	3395

DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606

Entity 2 polymer

description	IGG FAB (HUMAN IGG1, KAPPA)
formula_weight	23609.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLYLQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606

Entity 3 branched

description	alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	675.6 kDa
src_method	man
entity_count	1

Entity 4 non-polymer

description	METHYL NONANOATE (ESTER)
formula_weight	172.3 kDa
src_method	syn
entity_count	1

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6. Citations (2)

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length_a	81.700 Å
length_b	81.700 Å
length_c	166.300 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.500 Å
resolution_low	8.000 Å
r_factor	0.2380
r_work	0.2380
r_free	0.2980

fit	/app/data/saxs_computation/cl/1cly/1cly.fit
pddf	/app/data/pr_computation/cl/1cly/1cly.pr.out
profile	/app/data/saxs_computation/cl/1cly/1cly.dat

IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 branched

Entity 4 non-polymer

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)