← Back to search

1cm8

PHOSPHORYLATED MAP KINASE P38-GAMMA

Method: X-RAY DIFFRACTION D_max: 110.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1cm8
deposition_date	1999-05-17
title	PHOSPHORYLATED MAP KINASE P38-GAMMA
keywords	P38-GAMMA, GAMMA, PHOSPHORYLATION, MAP KINASE, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	34.05 Å
rg_electron	33.65 Å
i0	88650900.00
molecular_weight	74886.0 kDa
excluded_volume	93605 Å³
envelope_volume	121970 Å³
shell_volume	31450 Å³
envelope_diameter	116.9 Å
shell_rg	38.28 Å
envelope_rg	33.60 Å
shape_rg	33.71 Å
total_rg	33.81 Å
total_atoms	5256
n_residues	654
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	110.4 Å
rg_real	34.27 Å
rg_real_error	0.96 Å
i0_real	8.8650e+07
i0_real_error	1.5450e+06
rg_reciprocal	34.14 Å
i0_reciprocal	88640000.0000
total_estimate	0.8171
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.8 Å
skewness	0.430
kurtosis	-0.548
angular_range	— – 0.2300 Å⁻¹
current_alpha	0.0000
highest_alpha	20760000.0000
n_real_points	47
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.817; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.834; Smooth: 0.332

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	PHOSPHORYLATED MAP KINASE P38-GAMMA
formula_weight	42157.1 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	5442

MSSPPPARSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDEPQVQKYDDSFDDVDRTLDEWKRVTYKEVLSFKPPRQLGARVSKETPL

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
formula_weight	506.2 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	186

▶

6. Citations (1)

▶

length_a	63.500 Å
length_b	66.820 Å
length_c	206.020 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.400 Å
resolution_low	50.000 Å
r_factor	—
r_work	0.2322
r_free	0.2826

fit	/app/data/saxs_computation/cm/1cm8/1cm8.fit
pddf	/app/data/pr_computation/cm/1cm8/1cm8.pr.out
profile	/app/data/saxs_computation/cm/1cm8/1cm8.dat

PHOSPHORYLATED MAP KINASE P38-GAMMA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction