SAXSdb — 1cov

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1. Structure Basics

entry_id	1cov
deposition_date	1994-10-19
title	COXSACKIEVIRUS B3 COAT PROTEIN
keywords	COXSACKIEVIRUS B3, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.54 Å
rg_electron	28.51 Å
i0	133909000.00
molecular_weight	91130.0 kDa
excluded_volume	113680 Å³
envelope_volume	138500 Å³
shell_volume	39607 Å³
envelope_diameter	105.1 Å
shell_rg	36.51 Å
envelope_rg	29.24 Å
shape_rg	28.50 Å
total_rg	29.28 Å
total_atoms	6409
n_residues	818
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	98.1 Å
rg_real	29.51 Å
rg_real_error	0.65 Å
i0_real	1.3390e+08
i0_real_error	1.8170e+06
rg_reciprocal	29.53 Å
i0_reciprocal	133900000.0000
total_estimate	0.8835
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	34.5 Å
skewness	0.361
kurtosis	-0.217
angular_range	— – 0.2700 Å⁻¹
current_alpha	0.0000
highest_alpha	23410000.0000
n_real_points	55
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.838; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.968

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	COXSACKIEVIRUS COAT PROTEIN
formula_weight	31380.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	1
atom_count	6409

GPVEDAITAAIGRVADTVGTGPTNSEAIPALTAAETGHTSQVVPSDTMQTRHVKNYHSRSESTIENFLCRSACVYFTEYENSGAKRYAEWVITPRQAAQLRRKLEFFTYVRFDLELTFVITSTQQPSTTQNQDAQILTHQIMYVPPGGPVPDKVDSYVWQTSTNPSVFWTEGNAPPRMSVPFLSIGNAYSNFYDGWSEFSRNGVYGINTLNNMGTLYARHVNAGSTGPIKSTIRIYFKPKHVKAWIPRPPRLCQYEKAKNVNFQPSGVTTTRQSITTMTNT

Entity 2 polymer

description	COXSACKIEVIRUS COAT PROTEIN
formula_weight	28877.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	2

SPTVEECGYSDRVRSITLGNSTITTQECANVVVGYGVWPDYLKDSEATAEDQPTQPDVATCRFYTLDSVQWQKTSPGWWWKLPDALSNLGLFGQNMQYHYLGRTGYTIHVQCNASKFHQGCLLVVCVPEAEMGCATLNNTPSSAELLGGDTAKEFADKPVASGSNKLVQRVVYNAGMGVGVGNLTIFPHQWINLRTNNSATIVMPYTNSVPMDNMFRHNNVTLMVIPFVPLDYCPGSTTYVPITVTIAPMCAEYNGLRLAGHQ

Entity 3 polymer

description	COXSACKIEVIRUS COAT PROTEIN
formula_weight	26198.7 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	3

GLPTMNTPGSCQFLTSDDFQSPSAMPQYDVTPEMRIPGEVKNLMEIAEVDSVVPVQNVGEKVNSMEAYQIPVRSNEGSGTQVFGFPLQPGYSSVFSRTLLGEILNYYTHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTKRVDAMLGTHVVWDVGLQSSCVLCIPWISQTHYRYVASDEYTAGGFITCWYQTNIVVPADAQSSCYIMCFVSACNDFSVRLLKDTPFISQENFFQ

Entity 4 polymer

description	COXSACKIEVIRUS COAT PROTEIN
formula_weight	7379.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	4

GAQVSTQKTGAHETGLNASGNSIIHYTNINYYKDAASNSANRQDFTQDPSKFTEPVKDIMIKSLPALN

Entity 5 non-polymer

description	PALMITIC ACID
formula_weight	256.4 kDa
src_method	syn
entity_count	1

Entity 6 non-polymer

description	MYRISTIC ACID
formula_weight	228.4 kDa
src_method	syn
entity_count	1

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6. Citations (2)

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length_a	574.620 Å
length_b	302.070 Å
length_c	521.610 Å
angle_alpha	90.00 °
angle_beta	107.70 °
angle_gamma	90.00 °
z_pdb	240

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	3.500 Å
resolution_low	10.000 Å
r_factor	0.2640
r_work	0.2640
r_free	—

fit	/app/data/saxs_computation/co/1cov/1cov.fit
pddf	/app/data/pr_computation/co/1cov/1cov.pr.out
profile	/app/data/saxs_computation/co/1cov/1cov.dat

COXSACKIEVIRUS B3 COAT PROTEIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 non-polymer

Entity 6 non-polymer

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)