← Back to search

1d1j

CRYSTAL STRUCTURE OF HUMAN PROFILIN II

Method: X-RAY DIFFRACTION D_max: 82.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1d1j
deposition_date	1999-09-17
title	CRYSTAL STRUCTURE OF HUMAN PROFILIN II
keywords	ACIDIC PROFILIN ISOFORM, ACTIN-BINDING PROTEIN, POLY-L-PROLINE BINDING PROTEIN, CONTRACTILE PROTEIN; CONTRACTILE PROTEIN
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	25.66 Å
rg_electron	24.75 Å
i0	61052800.00
molecular_weight	59125.0 kDa
excluded_volume	73308 Å³
envelope_volume	87854 Å³
shell_volume	29293 Å³
envelope_diameter	84.4 Å
shell_rg	32.19 Å
envelope_rg	24.80 Å
shape_rg	24.74 Å
total_rg	25.56 Å
total_atoms	4125
n_residues	549
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	82.8 Å
rg_real	25.56 Å
rg_real_error	0.48 Å
i0_real	6.1050e+07
i0_real_error	8.3760e+05
rg_reciprocal	25.60 Å
i0_reciprocal	61050000.0000
total_estimate	0.8947
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.0 Å
skewness	0.199
kurtosis	-0.488
angular_range	— – 0.3100 Å⁻¹
current_alpha	0.0000
highest_alpha	39270000.0000
n_real_points	63
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.889; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.961

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (5)

Entity 1 polymer

description	PROFILIN II
formula_weight	14973.1 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	4516

AGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVHGGTLNKKAYELALYLRRSDV

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
formula_weight	266.3 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
formula_weight	178.2 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	391

▶

6. Citations (1)

▶

length_a	71.140 Å
length_b	44.800 Å
length_c	89.600 Å
angle_alpha	90.00 °
angle_beta	98.59 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.200 Å
resolution_low	20.000 Å
r_factor	0.2200
r_work	0.2160
r_free	0.2680

fit	/app/data/saxs_computation/d1/1d1j/1d1j.fit
pddf	/app/data/pr_computation/d1/1d1j/1d1j.pr.out
profile	/app/data/saxs_computation/d1/1d1j/1d1j.dat