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1d3x

INTRAMOLECULAR DNA TRIPLEX, NMR, 10 STRUCTURES

Method: SOLUTION NMR D_max: 37.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1d3x
deposition_date	1998-02-05
title	INTRAMOLECULAR DNA TRIPLEX, NMR, 10 STRUCTURES
keywords	OLIGONUCLEOTIDE, TRIPLEX, RNA THIRD STRAND, DNA; DNA
method	SOLUTION NMR

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	11.01 Å
rg_electron	10.83 Å
i0	190004000.00
molecular_weight	71630.0 kDa
excluded_volume	71166 Å³
envelope_volume	12314 Å³
shell_volume	9135 Å³
envelope_diameter	38.3 Å
shell_rg	17.13 Å
envelope_rg	11.98 Å
shape_rg	10.65 Å
total_rg	11.29 Å
total_atoms	7590
n_residues	240
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	37.1 Å
rg_real	10.94 Å
rg_real_error	0.30 Å
i0_real	1.9000e+08
i0_real_error	2.1300e+06
rg_reciprocal	10.94 Å
i0_reciprocal	190000000.0000
total_estimate	0.8753
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	13.6 Å
skewness	0.130
kurtosis	-0.383
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	148000.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.794; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.993

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	;DNA (5'-D(APGPAPGPAPGPAPA)-3') ;
formula_weight	2508.7 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	A
atom_count	7590

AGAGAGAA

Entity 2 polymer

description	;DNA (5'-D(TPTPCPTPCPTPCPT)-3') ;
formula_weight	2343.6 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	B

TTCTCTCT

Entity 3 polymer

description	;DNA (5'-D(TPCPTPCPTPCPTPT)-3') ;
formula_weight	2343.6 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	C

TCTCTCTT

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

fit	/app/data/saxs_computation/d3/1d3x/1d3x.fit
pddf	/app/data/pr_computation/d3/1d3x/1d3x.pr.out
profile	/app/data/saxs_computation/d3/1d3x/1d3x.dat

INTRAMOLECULAR DNA TRIPLEX, NMR, 10 STRUCTURES

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)