1d3y
STRUCTURE OF THE DNA TOPOISOMERASE VI A SUBUNIT
1. Protein Identity and Related Structures Protein Identity & Related Structures
No usable UniProt protein identity is available for this entry.
The relationship tables retain this entry's assembly and composition data, but cross-PDB links for the same protein cannot be established reliably without a unified protein identity.
Assembly Composition of the Current Entry
| Assembly | Physical composition | Protein state | 蛋白 / DNA / RNA / 其他Polymer | Data consistency |
|---|---|---|---|---|
| 1 | Protein homooligomer | Homooligomer | 2 / 0 / 0 / 0 | Consistent with protein count |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
2. Structure Basics 2. Structure Basics
| Entry ID entry_id | 1d3y |
| Deposition date deposition_date | 1999-10-01 |
| Structure title title | STRUCTURE OF THE DNA TOPOISOMERASE VI A SUBUNIT |
| Keywords keywords | TOPOISOMERASE VI, DNA BINDING PROTEIN, SPO11 HOMOLOG, ISOMERASE; ISOMERASE |
| Experimental Method method | X-RAY DIFFRACTION |
3. Official assembly/model SAXS Official SAXS Profiles
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
1d3y__assembly_1__model_1
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
1d3y__assembly_1__model_1 | I(q)
1d3y__assembly_1__model_1 | P(r) · Pending
| Rg（Guinier） | 25.77 Å |
| Rg (electron density) | 24.68 Å |
| Total Rg | 25.60 Å |
| Atom count | 4653 |
| Residues | 579 |
| Excluded volume | 83227 ų |
| Maximum q | 0.500 Å⁻¹ |
4. Crystallography and Experiment 4. Crystallography & Experiment
5. Entities and Polymers Entities & Polymers (4)
6. Fold Classification (SCOP + CATH) 6 domains
SCOP 2.08 (2 domains)
| Domain ID domain_id | d1d3ya_ |
| Class class | e — Multi-domain proteins (alpha and beta) |
| Fold Fold fold | e.12 — DNA topoisomerase IV, alpha subunit |
| Superfamily Superfamily superfamily | e.12.1 — DNA topoisomerase IV, alpha subunit |
| Family Family family | e.12.1.1 — DNA topoisomerase IV, alpha subunit |
| Domain ID domain_id | d1d3yb_ |
| Class class | e — Multi-domain proteins (alpha and beta) |
| Fold Fold fold | e.12 — DNA topoisomerase IV, alpha subunit |
| Superfamily Superfamily superfamily | e.12.1 — DNA topoisomerase IV, alpha subunit |
| Family Family family | e.12.1.1 — DNA topoisomerase IV, alpha subunit |
CATH v4.4 (4 domains)
| Domain ID domain_id | 1d3yA01 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 10 — Arc Repressor Mutant, subunit A |
| Homologous superfamily homologous superfamily | 10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain |
| Domain ID domain_id | 1d3yA02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| Topology topology | 1360 — Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 |
| Homologous superfamily homologous superfamily | 10 — |
| Domain ID domain_id | 1d3yB01 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 10 — Arc Repressor Mutant, subunit A |
| Homologous superfamily homologous superfamily | 10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain |
| Domain ID domain_id | 1d3yB02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| Topology topology | 1360 — Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 |
| Homologous superfamily homologous superfamily | 10 — |