← Back to search

1d5t

GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR, ALPHA-ISOFORM

Method: X-RAY DIFFRACTION D_max: 77.5 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1d5t
deposition_date	1999-10-11
title	GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR, ALPHA-ISOFORM
keywords	HYDROLASE INHIBITOR; HYDROLASE INHIBITOR
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	23.84 Å
rg_electron	22.68 Å
i0	40144900.00
molecular_weight	48859.0 kDa
excluded_volume	61129 Å³
envelope_volume	72378 Å³
shell_volume	26470 Å³
envelope_diameter	80.4 Å
shell_rg	29.94 Å
envelope_rg	22.91 Å
shape_rg	22.67 Å
total_rg	23.59 Å
total_atoms	3428
n_residues	433
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	77.5 Å
rg_real	23.75 Å
rg_real_error	0.55 Å
i0_real	4.0140e+07
i0_real_error	5.8440e+05
rg_reciprocal	23.77 Å
i0_reciprocal	40150000.0000
total_estimate	0.6525
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	27.8 Å
skewness	0.249
kurtosis	-0.418
angular_range	— – 0.3350 Å⁻¹
current_alpha	0.0000
highest_alpha	11040000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.875; Stabil: 0.999; Sysdev: 0.286; Positv: 1.000; Valcen: 0.999; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR
formula_weight	48930.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3827

HHMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDF

Source

organism	Bos taurus
common_name	cattle
ncbi_taxonomy_id	9913
host_organism	Escherichia coli

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	387

▶

6. Citations (1)

▶

length_a	89.290 Å
length_b	42.740 Å
length_c	61.780 Å
angle_alpha	90.00 °
angle_beta	104.55 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.040 Å
resolution_low	10.000 Å
r_factor	0.1730
r_work	—
r_free	0.2090

fit	/app/data/saxs_computation/d5/1d5t/1d5t.fit
pddf	/app/data/pr_computation/d5/1d5t/1d5t.pr.out
profile	/app/data/saxs_computation/d5/1d5t/1d5t.dat

GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR, ALPHA-ISOFORM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction