← Back to search

1d7y

CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4

Method: X-RAY DIFFRACTION D_max: 70.2 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1d7y
deposition_date	1999-10-21
title	CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
keywords	FLAVOPROTEIN ROSSMANN FOLD, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	22.98 Å
rg_electron	22.07 Å
i0	32693400.00
molecular_weight	43033.0 kDa
excluded_volume	53586 Å³
envelope_volume	63582 Å³
shell_volume	24092 Å³
envelope_diameter	71.6 Å
shell_rg	28.72 Å
envelope_rg	22.14 Å
shape_rg	22.06 Å
total_rg	22.90 Å
total_atoms	3029
n_residues	401
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	70.2 Å
rg_real	22.88 Å
rg_real_error	0.31 Å
i0_real	3.2690e+07
i0_real_error	3.8280e+05
rg_reciprocal	22.91 Å
i0_reciprocal	32690000.0000
total_estimate	0.9133
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	27.0 Å
skewness	0.184
kurtosis	-0.565
angular_range	— – 0.3450 Å⁻¹
current_alpha	0.0000
highest_alpha	8721000.0000
n_real_points	66
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.959; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.994

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	FERREDOXIN REDUCTASE
formula_weight	43221.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3149

MSQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAAVAA

Source

organism	Pseudomonas sp.
ncbi_taxonomy_id	307
host_organism	Escherichia coli

Entity 2 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	1

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	120

▶

6. Citations (1)

▶

length_a	99.200 Å
length_b	99.200 Å
length_c	175.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 61 2 2
int_tables_number	178
crystal_system	—

resolution	2.100 Å
resolution_low	40.000 Å
r_factor	0.1880
r_work	0.1830
r_free	0.2280

fit	/app/data/saxs_computation/d7/1d7y/1d7y.fit
pddf	/app/data/pr_computation/d7/1d7y/1d7y.pr.out
profile	/app/data/saxs_computation/d7/1d7y/1d7y.dat

CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction