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1dce

CRYSTAL STRUCTURE OF RAB GERANYLGERANYLTRANSFERASE FROM RAT BRAIN

Method: X-RAY DIFFRACTION D_max: 142.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dce
deposition_date	1999-11-04
title	CRYSTAL STRUCTURE OF RAB GERANYLGERANYLTRANSFERASE FROM RAT BRAIN
keywords	RAB GERANYLGERANYLTRANSFERASE, 2.0 A RESOLUTION, N-FORMYLMETHIONINE, ALPHA SUBUNIT, BETA SUBUNIT, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	43.16 Å
rg_electron	42.81 Å
i0	607054000.00
molecular_weight	201580.0 kDa
excluded_volume	251730 Å³
envelope_volume	336780 Å³
shell_volume	65564 Å³
envelope_diameter	139.6 Å
shell_rg	47.74 Å
envelope_rg	42.11 Å
shape_rg	42.82 Å
total_rg	43.03 Å
total_atoms	14153
n_residues	1790
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	142.6 Å
rg_real	43.15 Å
rg_real_error	1.18 Å
i0_real	6.0710e+08
i0_real_error	1.0450e+07
rg_reciprocal	43.16 Å
i0_reciprocal	607100000.0000
total_estimate	0.8973
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	46.2 Å
skewness	0.278
kurtosis	-0.607
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	89960000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.905; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.949

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT)
formula_weight	65009.2 kDa
ec_number	2.5.1.-
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	14982

MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT

Entity 2 polymer

description	PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT)
formula_weight	36892.2 kDa
ec_number	2.5.1.-
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

MGTQQKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVNVQPELVS

Entity 3 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	829

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6. Citations (1)

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length_a	57.864 Å
length_b	77.439 Å
length_c	121.775 Å
angle_alpha	74.60 °
angle_beta	79.91 °
angle_gamma	67.89 °
z_pdb	2

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.000 Å
resolution_low	20.000 Å
r_factor	—
r_work	0.2147
r_free	0.2634

fit	/app/data/saxs_computation/dc/1dce/1dce.fit
pddf	/app/data/pr_computation/dc/1dce/1dce.pr.out
profile	/app/data/saxs_computation/dc/1dce/1dce.dat

CRYSTAL STRUCTURE OF RAB GERANYLGERANYLTRANSFERASE FROM RAT BRAIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)