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1dk5

CRYSTAL STRUCTURE OF ANNEXIN 24(CA32) FROM CAPSICUM ANNUUM

Method: X-RAY DIFFRACTION D_max: 142.6 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dk5
deposition_date	1999-12-06
title	CRYSTAL STRUCTURE OF ANNEXIN 24(CA32) FROM CAPSICUM ANNUUM
keywords	PLANT ANNEXIN, CAPSICUM ANNUUM, BELL PEPPER, CALCIUM BINDING PROTEIN, METAL BINDING PROTEIN; METAL BINDING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	50.54 Å
rg_electron	50.62 Å
i0	93517800.00
molecular_weight	75147.0 kDa
excluded_volume	91924 Å³
envelope_volume	149220 Å³
shell_volume	24353 Å³
envelope_diameter	153.2 Å
shell_rg	56.67 Å
envelope_rg	47.63 Å
shape_rg	50.63 Å
total_rg	50.81 Å
total_atoms	5244
n_residues	630
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	142.6 Å
rg_real	50.94 Å
rg_real_error	1.40 Å
i0_real	9.3520e+07
i0_real_error	1.9460e+06
rg_reciprocal	50.16 Å
i0_reciprocal	93420000.0000
total_estimate	0.5468
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	27.6 Å
skewness	0.177
kurtosis	-1.427
angular_range	— – 0.1550 Å⁻¹
current_alpha	0.0000
highest_alpha	3464000.0000
n_real_points	32
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.024; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.032; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	ANNEXIN 24(CA32)
formula_weight	36940.8 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	5572

MAHHHHHHMASLTVPAHVPSAAEDCEQLRSAFKGWGTNEKLIISILAHRTAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVLVWTLDPSERDAHLAKEATKRWTKSNFVLVELACTRSPKELVLAREAYHARYKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGEEVDLRLAKAESKILHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEHGEDILKQLEDGDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKIIADEYQKRDSIPLGRAIAKDTRGDYESMLLALLGQEED

Source

organism	Capsicum annuum
ncbi_taxonomy_id	4072
host_organism	Escherichia coli

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	33

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	328

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6. Citations (2)

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length_a	96.760 Å
length_b	96.760 Å
length_c	173.390 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.800 Å
resolution_low	50.000 Å
r_factor	0.2160
r_work	0.2160
r_free	0.3160

fit	/app/data/saxs_computation/dk/1dk5/1dk5.fit
pddf	/app/data/pr_computation/dk/1dk5/1dk5.pr.out
profile	/app/data/saxs_computation/dk/1dk5/1dk5.dat

CRYSTAL STRUCTURE OF ANNEXIN 24(CA32) FROM CAPSICUM ANNUUM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction