1dk6
NMR structure analysis of the DNA nine base pair duplex D(CATGAGTAC) D(GTAC(NP3)CATG)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dk6 |
| deposition_date | 1999-12-06 |
| title | NMR structure analysis of the DNA nine base pair duplex D(CATGAGTAC) D(GTAC(NP3)CATG) |
| keywords | DNA DOUBLE HELIX, 3-NITROPYRROLE, DNA; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 11.22 Å |
| rg_electron | 10.36 Å |
| i0 | 1609100.00 |
| molecular_weight | 5437.0 kDa |
| excluded_volume | 5300 ų |
| envelope_volume | 6705 ų |
| shell_volume | 6008 ų |
| envelope_diameter | 35.0 Å |
| shell_rg | 14.90 Å |
| envelope_rg | 10.58 Å |
| shape_rg | 10.19 Å |
| total_rg | 11.47 Å |
| total_atoms | 567 |
| n_residues | 17 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 36.7 Å |
| rg_real | 11.19 Å |
| rg_real_error | 0.25 Å |
| i0_real | 1.6090e+06 |
| i0_real_error | 1.4930e+04 |
| rg_reciprocal | 11.19 Å |
| i0_reciprocal | 1609000.0000 |
| total_estimate | 0.7206 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 13.9 Å |
| skewness | 0.219 |
| kurtosis | -0.329 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 89280.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.879; Stabil: 1.000; Sysdev: 0.256; Positv: 1.000; Valcen: 0.997; Smooth: 0.960 |