STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ

entry_id	1dn0
deposition_date	1999-12-15
title	STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ
keywords	FAB, IGM, ANTIBODY, COLD AGGLUTININ, HUMAN, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

rg_guinier	41.80 Å
rg_electron	42.10 Å
i0	136172000.00
molecular_weight	93512.0 kDa
excluded_volume	116440 ų
envelope_volume	157480 ų
shell_volume	35599 ų
envelope_diameter	140.8 Å
shell_rg	40.50 Å
envelope_rg	41.30 Å
shape_rg	42.17 Å
total_rg	41.78 Å
total_atoms	6594
n_residues	863
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	133.4 Å
rg_real	42.38 Å
rg_real_error	1.43 Å
i0_real	1.3620e+08
i0_real_error	2.4940e+06
rg_reciprocal	41.81 Å
i0_reciprocal	136100000.0000
total_estimate	0.7571
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	35.1 Å
skewness	0.591
kurtosis	-0.481
angular_range	— – 0.1900 Å−1
current_alpha	0.0000
highest_alpha	7895000.0000
n_real_points	39
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.719; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.681; Smooth: 0.000

Unit Cell

length_a	110.880 Å
length_b	110.880 Å
length_c	170.760 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

Symmetry

space_group	P 31 2 1
int_tables_number	152
crystal_system	—

Refinement

resolution	2.280 Å
resolution_low	100.000 Å
r_factor	0.1800
r_work	0.1800
r_free	0.2400

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/dn/1dn0/pr_distribution.json
• pr_output /app/data/pr_computation/dn/1dn0/1dn0.pr.out
• pr_plot /app/data/visualization/pr_computation/dn/1dn0/1dn0_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/dn/1dn0/1dn0.dat
• saxs_fit /app/data/saxs_computation/dn/1dn0/1dn0.fit
• saxs_log /app/data/saxs_computation/dn/1dn0/1dn0.log
• saxs_plot /app/data/visualization/saxs_computation/dn/1dn0/1dn0_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/dn/1dn0/1dn0.fit
pddf	/app/data/pr_computation/dn/1dn0/1dn0.pr.out
profile	/app/data/saxs_computation/dn/1dn0/1dn0.dat