1dne
MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 2
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dne |
| deposition_date | 1988-09-14 |
| title | MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 2 |
| keywords | B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.46 Å |
| rg_electron | 12.98 Å |
| i0 | 2989860.00 |
| molecular_weight | 7743.0 kDa |
| excluded_volume | 7553 ų |
| envelope_volume | 9683 ų |
| shell_volume | 7161 ų |
| envelope_diameter | 45.1 Å |
| shell_rg | 17.00 Å |
| envelope_rg | 13.29 Å |
| shape_rg | 12.88 Å |
| total_rg | 13.72 Å |
| total_atoms | 517 |
| n_residues | 24 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.1 Å |
| rg_real | 13.55 Å |
| rg_real_error | 0.38 Å |
| i0_real | 2.9900e+06 |
| i0_real_error | 3.6360e+04 |
| rg_reciprocal | 13.54 Å |
| i0_reciprocal | 2990000.0000 |
| total_estimate | 0.7358 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 14.0 Å |
| skewness | 0.487 |
| kurtosis | -0.259 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 184900.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.801; Stabil: 1.000; Sysdev: 0.499; Positv: 1.000; Valcen: 0.794; Smooth: 0.866 |