1dno
A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dno |
| deposition_date | 1999-12-16 |
| title | A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES |
| keywords | DNA CONFORMATION, RNA/DNA HYBRID, METAL IONS, DNA-RNA COMPLEX, DNA-RNA HYBRID COMPLEX, DNA-RNA HYBRID; DNA-RNA HYBRID |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 11.84 Å |
| rg_electron | 11.13 Å |
| i0 | 2131610.00 |
| molecular_weight | 6265.0 kDa |
| excluded_volume | 6037 ų |
| envelope_volume | 7887 ų |
| shell_volume | 6691 ų |
| envelope_diameter | 42.6 Å |
| shell_rg | 15.60 Å |
| envelope_rg | 11.22 Å |
| shape_rg | 10.98 Å |
| total_rg | 12.11 Å |
| total_atoms | 414 |
| n_residues | 20 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 43.2 Å |
| rg_real | 11.82 Å |
| rg_real_error | 0.42 Å |
| i0_real | 2.1320e+06 |
| i0_real_error | 2.2930e+04 |
| rg_reciprocal | 11.82 Å |
| i0_reciprocal | 2132000.0000 |
| total_estimate | 0.8102 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 15.3 Å |
| skewness | 0.344 |
| kurtosis | 0.058 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 111500.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.538; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.952; Smooth: 0.963 |