1dnt
RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dnt |
| deposition_date | 1999-12-16 |
| title | RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES |
| keywords | DNA CONFORMATION, RNA/DNA HYBRID, METAL IONS, DNA-RNA COMPLEX, DNA-RNA HYBRID COMPLEX, DNA-RNA HYBRID; DNA-RNA HYBRID |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 12.04 Å |
| rg_electron | 11.35 Å |
| i0 | 2040730.00 |
| molecular_weight | 6160.0 kDa |
| excluded_volume | 5954 ų |
| envelope_volume | 7779 ų |
| shell_volume | 6501 ų |
| envelope_diameter | 39.9 Å |
| shell_rg | 15.68 Å |
| envelope_rg | 11.32 Å |
| shape_rg | 11.22 Å |
| total_rg | 12.28 Å |
| total_atoms | 409 |
| n_residues | 20 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 42.3 Å |
| rg_real | 12.01 Å |
| rg_real_error | 0.43 Å |
| i0_real | 2.0410e+06 |
| i0_real_error | 2.2500e+04 |
| rg_reciprocal | 12.02 Å |
| i0_reciprocal | 2041000.0000 |
| total_estimate | 0.8398 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.1 Å |
| skewness | 0.270 |
| kurtosis | -0.130 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 73100.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.653; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.969; Smooth: 0.984 |