1dnx
RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dnx |
| deposition_date | 1999-12-16 |
| title | RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES |
| keywords | DNA CONFORMATION, RNA/DNA HYBRID, METAL IONS, DNA-RNA COMPLEX, DNA-RNA HYBRID; DNA-RNA HYBRID |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 11.81 Å |
| rg_electron | 11.03 Å |
| i0 | 2025900.00 |
| molecular_weight | 6128.0 kDa |
| excluded_volume | 5935 ų |
| envelope_volume | 7720 ų |
| shell_volume | 6589 ų |
| envelope_diameter | 38.5 Å |
| shell_rg | 15.49 Å |
| envelope_rg | 11.04 Å |
| shape_rg | 10.88 Å |
| total_rg | 12.02 Å |
| total_atoms | 407 |
| n_residues | 20 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 42.7 Å |
| rg_real | 11.77 Å |
| rg_real_error | 0.38 Å |
| i0_real | 2.0260e+06 |
| i0_real_error | 2.5180e+04 |
| rg_reciprocal | 11.77 Å |
| i0_reciprocal | 2026000.0000 |
| total_estimate | 0.8311 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 15.7 Å |
| skewness | 0.220 |
| kurtosis | -0.150 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 92080.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.612; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.969; Smooth: 0.995 |