1dxn
The Solution Structure of [d(CGC)r(aaa)d(TTTGCG)]2: Hybrid Junctions Flanked by DNA Duplexes
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dxn |
| deposition_date | 2000-01-11 |
| title | The Solution Structure of [d(CGC)r(aaa)d(TTTGCG)]2: Hybrid Junctions Flanked by DNA Duplexes |
| keywords | DNA-RNA HYBRID, DNA/RNA CHIMERIC HYBRID DUPLEX, DNA/RNA HYBRID, CHIMERIC DUPLEX; DNA-RNA HYBRID |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.05 Å |
| rg_electron | 12.92 Å |
| i0 | 235407000.00 |
| molecular_weight | 75690.0 kDa |
| excluded_volume | 72509 ų |
| envelope_volume | 13130 ų |
| shell_volume | 8790 ų |
| envelope_diameter | 45.0 Å |
| shell_rg | 18.21 Å |
| envelope_rg | 13.90 Å |
| shape_rg | 12.76 Å |
| total_rg | 13.28 Å |
| total_atoms | 7740 |
| n_residues | 240 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 43.9 Å |
| rg_real | 13.09 Å |
| rg_real_error | 0.42 Å |
| i0_real | 2.3540e+08 |
| i0_real_error | 2.8650e+06 |
| rg_reciprocal | 13.09 Å |
| i0_reciprocal | 235400000.0000 |
| total_estimate | 0.8825 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 15.0 Å |
| skewness | 0.350 |
| kurtosis | -0.418 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 83480.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.866; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.902; Smooth: 0.970 |