1eax

Crystal structure of MTSP1 (matriptase)

Method: X-RAY DIFFRACTION Dmax: 52.2 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

SUPPRESSOR OF TUMORIGENICITY 14

HOMO SAPIENS

UniProt Q9Y5Y6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 615–855 Fragment:CATALYTIC RESIDUES 615-855 SO4 SULFATE ION × 1 BEN BENZAMIDINE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 8;pH 8.00 Resolution 1.30 Å R-free 0.193

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

22 other PDB entries and 27 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ST14_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–241; UniProt 615–855

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1eax

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1eax
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1eax
Deposition date deposition_date2001-07-17
Structure title titleCrystal structure of MTSP1 (matriptase)
Keywords keywordsHYDROLASE, SERINE PROTEINASE, MATRIX DEGRADATION; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier17.82
Radius of gyration Rg (electron density) rg_electron16.59
Forward intensity I(0) i013353900.00
Molecular weight molecular_weight26648.0 kDa
Excluded volume excluded_volume33030 ų
Envelope volume envelope_volume36948 ų
Hydration-shell volume shell_volume18077 ų
Envelope diameter envelope_diameter54.3
Shell Rg shell_rg23.37
Envelope Rg envelope_rg16.94
Shape Rg shape_rg16.58
Total Rg total_rg17.68
Total atoms total_atoms1878
Residues n_residues241
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax52.2
Rg (real space) rg_real17.64
Rg uncertainty (real space) rg_real_error0.06
I(0) (real space) i0_real1.2870e+07
I(0) uncertainty (real space) i0_real_error1.1410e+05
Rg (reciprocal space) rg_reciprocal17.69
I(0) (reciprocal space) i0_reciprocal13350000.0000
Solution quality estimate total_estimate0.7154
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary22.6
Skewness Skewness skewness0.098
Kurtosis Kurtosis kurtosis-0.442
Angular range angular_range— – 0.4450 −1
Current regularization parameter α current_alpha11.0000
Highest regularization parameter α highest_alpha4030000.0000
Real-space data points n_real_points75
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.949; Stabil: 0.914; Sysdev: 0.000; Positv: 1.000; Valcen: 0.973; Smooth: 0.752

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1eaxa_
Class classb — All beta proteins
Fold Fold foldb.47 — Trypsin-like serine proteases
Superfamily Superfamily superfamilyb.47.1 — Trypsin-like serine proteases
Family Family familyb.47.1.2 — Eukaryotic proteases

CATH v4.4 (2 domains)

Domain ID domain_id1eaxA01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases
Domain ID domain_id1eaxA02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases

8. Citations (1)

9. Files and Curves (10)