1efo
CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1efo |
| deposition_date | 2000-02-09 |
| title | CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG) |
| keywords | A-FORM CONFORMATION, HYBRID, ADENINE BULGE, LOOPED OUT, DNA-RNA COMPLEX, DNA-RNA HYBRID; DNA-RNA HYBRID |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 12.20 Å |
| rg_electron | 11.53 Å |
| i0 | 1927510.00 |
| molecular_weight | 5926.0 kDa |
| excluded_volume | 5696 ų |
| envelope_volume | 7656 ų |
| shell_volume | 6270 ų |
| envelope_diameter | 39.3 Å |
| shell_rg | 15.90 Å |
| envelope_rg | 11.59 Å |
| shape_rg | 11.44 Å |
| total_rg | 12.43 Å |
| total_atoms | 394 |
| n_residues | 19 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 45.8 Å |
| rg_real | 12.17 Å |
| rg_real_error | 0.46 Å |
| i0_real | 1.9280e+06 |
| i0_real_error | 2.4940e+04 |
| rg_reciprocal | 12.17 Å |
| i0_reciprocal | 1928000.0000 |
| total_estimate | 0.8184 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.8 Å |
| skewness | 0.198 |
| kurtosis | -0.327 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 57850.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.592; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.873; Smooth: 0.984 |