SOLUTION STRUCTURE OF A HNA-RNA HYBRID

Method: SOLUTION NMR D_max: 40.8 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ejz
deposition_date	2000-03-06
title	SOLUTION STRUCTURE OF A HNA-RNA HYBRID
keywords	HNA-RNA complex, double helix, A-type conformation, RNA; RNA
method	SOLUTION NMR

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	10.70 Å
rg_electron	10.07 Å
i0	1463650.00
molecular_weight	5216.0 kDa
excluded_volume	5087 Å³
envelope_volume	6068 Å³
shell_volume	5740 Å³
envelope_diameter	39.6 Å
shell_rg	14.51 Å
envelope_rg	10.36 Å
shape_rg	9.91 Å
total_rg	11.10 Å
total_atoms	550
n_residues	8
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	40.8 Å
rg_real	10.70 Å
rg_real_error	0.43 Å
i0_real	1.4640e+06
i0_real_error	1.6990e+04
rg_reciprocal	10.70 Å
i0_reciprocal	1464000.0000
total_estimate	0.7183
solution_quality	REASONABLE a REASONABLE solution
n_peaks	3
r_peak_primary	13.4 Å
skewness	0.386
kurtosis	0.147
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	81990.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.483; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.886; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

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6. Citations (2)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

description	;RNA (5'-R(CPGPCPUPAPCPGPC)-3') ;
formula_weight	2501.6 kDa
src_method	syn
entity_count	1

type	polyribonucleotide
strand_id	A
atom_count	550

description	;DNA (5'-H((6HG)P(6HC)P(6HG)P(6HT)P(6HA)P(6HG)P(6HC)P(6HG))-3') ;
formula_weight	2579.8 kDa
src_method	syn
entity_count	1

SOLUTION STRUCTURE OF A HNA-RNA HYBRID

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

description	PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER
formula_weight	156.1 kDa
src_method	syn
entity_count	1

fit	/app/data/saxs_computation/ej/1ejz/1ejz.fit
pddf	/app/data/pr_computation/ej/1ejz/1ejz.pr.out
profile	/app/data/saxs_computation/ej/1ejz/1ejz.dat