1ekd
;NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1ekd |
| deposition_date | 2000-03-07 |
| title | ;NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 ; |
| keywords | RNA, GU pair, Hydrogen Bond, Double Helix; RNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 11.62 Å |
| rg_electron | 10.99 Å |
| i0 | 1513000.00 |
| molecular_weight | 5093.0 kDa |
| excluded_volume | 4795 ų |
| envelope_volume | 6503 ų |
| shell_volume | 5694 ų |
| envelope_diameter | 37.5 Å |
| shell_rg | 15.21 Å |
| envelope_rg | 11.00 Å |
| shape_rg | 10.86 Å |
| total_rg | 11.91 Å |
| total_atoms | 516 |
| n_residues | 16 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 38.4 Å |
| rg_real | 11.60 Å |
| rg_real_error | 0.33 Å |
| i0_real | 1.5130e+06 |
| i0_real_error | 1.6450e+04 |
| rg_reciprocal | 11.60 Å |
| i0_reciprocal | 1513000.0000 |
| total_estimate | 0.8908 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 17.0 Å |
| skewness | 0.203 |
| kurtosis | -0.436 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 46790.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.886; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.945; Smooth: 0.980 |