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1evv

CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION

Method: X-RAY DIFFRACTION D_max: 81.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1evv
deposition_date	2000-04-20
title	CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION
keywords	TRANSFER RNA, PHENYLALANINE, PHE-TRNA, YEAST, AMINO-ACID TRANSPORT, RNA; RNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.97 Å
rg_electron	23.01 Å
i0	31126600.00
molecular_weight	25474.0 kDa
excluded_volume	24095 Å³
envelope_volume	36342 Å³
shell_volume	15207 Å³
envelope_diameter	85.6 Å
shell_rg	26.63 Å
envelope_rg	23.33 Å
shape_rg	22.97 Å
total_rg	23.36 Å
total_atoms	1676
n_residues	62
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	81.6 Å
rg_real	23.21 Å
rg_real_error	0.90 Å
i0_real	3.1130e+07
i0_real_error	4.6680e+05
rg_reciprocal	23.16 Å
i0_reciprocal	31130000.0000
total_estimate	0.8120
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	20.1 Å
skewness	0.537
kurtosis	-0.325
angular_range	— – 0.3450 Å⁻¹
current_alpha	0.0000
highest_alpha	2005000.0000
n_real_points	66
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.690; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.514; Smooth: 0.969

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

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6. Citations (7)

The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals.

J.Mol.Biol. (2000)

PMID: 10926517 · DOI: 10.1006/jmbi.2000.3950 PRIMARY

Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals

Acta Crystallogr.,Sect.A (1988)

DOI: 10.1107/S010876738700446X

;Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles ;

Biochemistry (1986)

Further refinement of the structure of yeast tRNA Phe

J.Mol.Biol. (1978)

Structure of yeast phenylalanine transfer RNA at 2.5 A resolution

Proc.Natl.Acad.Sci.USA (1975)

Structure of yeast phenylalanine tRNA at 3 A resolution

Nature (1974)

High-resolution X-ray diffraction studies on a pure species of transfer RNA

J.Mol.Biol. (1972)

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length_a	55.252 Å
length_b	32.988 Å
length_c	61.882 Å
angle_alpha	90.00 °
angle_beta	90.38 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.000 Å
resolution_low	25.790 Å
r_factor	0.2270
r_work	0.2270
r_free	0.2630

description	PHENYLALANINE TRANSFER RNA
formula_weight	24890.1 kDa
src_method	nat
entity_count	1

type	polyribonucleotide
strand_id	A
atom_count	1896

CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 non-polymer

Entity 3 non-polymer

Entity 4 water

6. Citations (7)

7. Files & Curves (10)

Files (7)

Curves (3)

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	10

description	SPERMINE
formula_weight	202.3 kDa
src_method	syn
entity_count	1

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	220

fit	/app/data/saxs_computation/ev/1evv/1evv.fit
pddf	/app/data/pr_computation/ev/1evv/1evv.pr.out
profile	/app/data/saxs_computation/ev/1evv/1evv.dat