1fpz
;CRYSTAL STRUCTURE ANALYSIS OF KINASE ASSOCIATED PHOSPHATASE (KAP) WITH A SUBSTITUTION OF THE CATALYTIC SITE CYSTEINE (CYS140) TO A SERINE ;
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1fpz |
| 沉积日期 deposition_date | 2000-09-01 |
| 结构标题 title | ;CRYSTAL STRUCTURE ANALYSIS OF KINASE ASSOCIATED PHOSPHATASE (KAP) WITH A SUBSTITUTION OF THE CATALYTIC SITE CYSTEINE (CYS140) TO A SERINE ; |
| 关键词 keywords | alpha-beta sandwich, HYDROLASE; HYDROLASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 52.26 Å |
| 回转半径 Rg (电子) rg_electron | 51.56 Å |
| 零角强度 I(0) i0 | 213916000.00 |
| 分子量 molecular_weight | 119740.0 kDa |
| 排除体积 excluded_volume | 149230 ų |
| 包络体积 envelope_volume | 256820 ų |
| 水化壳体积 shell_volume | 41575 ų |
| 包络直径 envelope_diameter | 140.3 Å |
| 壳层 Rg shell_rg | 58.74 Å |
| 包络 Rg envelope_rg | 46.96 Å |
| 形状 Rg shape_rg | 51.56 Å |
| 总 Rg total_rg | 51.82 Å |
| 总原子数 total_atoms | 8370 |
| 残基数 n_residues | 1062 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 140.0 Å |
| Rg (实空间) rg_real | 51.89 Å |
| Rg 误差 (实空间) rg_real_error | 1.03 Å |
| I(0) (实空间) i0_real | 2.1390e+08 |
| I(0) 误差 (实空间) i0_real_error | 3.8530e+06 |
| Rg (倒空间) rg_reciprocal | 52.54 Å |
| I(0) (倒空间) i0_reciprocal | 214100000.0000 |
| 解质量估计 total_estimate | 0.6786 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 3 |
| 主峰位置 r_peak_primary | 79.3 Å |
| 偏度 Skewness skewness | -0.476 |
| 峰度 Kurtosis kurtosis | -0.674 |
| 角度范围 angular_range | — – 0.1500 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 5163000.0000 |
| 实空间数据点数 n_real_points | 31 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.279; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.924; Smooth: 0.057 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 12 domains
SCOP 2.08 (6 domains)
| 结构域编号 domain_id | d1fpza_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.45 — (Phosphotyrosine protein) phosphatases II |
| 超家族 Superfamily superfamily | c.45.1 — (Phosphotyrosine protein) phosphatases II |
| 家族 Family family | c.45.1.1 — Dual specificity phosphatase-like |
| 结构域编号 domain_id | d1fpzb_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.45 — (Phosphotyrosine protein) phosphatases II |
| 超家族 Superfamily superfamily | c.45.1 — (Phosphotyrosine protein) phosphatases II |
| 家族 Family family | c.45.1.1 — Dual specificity phosphatase-like |
| 结构域编号 domain_id | d1fpzc_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.45 — (Phosphotyrosine protein) phosphatases II |
| 超家族 Superfamily superfamily | c.45.1 — (Phosphotyrosine protein) phosphatases II |
| 家族 Family family | c.45.1.1 — Dual specificity phosphatase-like |
| 结构域编号 domain_id | d1fpzd_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.45 — (Phosphotyrosine protein) phosphatases II |
| 超家族 Superfamily superfamily | c.45.1 — (Phosphotyrosine protein) phosphatases II |
| 家族 Family family | c.45.1.1 — Dual specificity phosphatase-like |
| 结构域编号 domain_id | d1fpze_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.45 — (Phosphotyrosine protein) phosphatases II |
| 超家族 Superfamily superfamily | c.45.1 — (Phosphotyrosine protein) phosphatases II |
| 家族 Family family | c.45.1.1 — Dual specificity phosphatase-like |
| 结构域编号 domain_id | d1fpzf_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.45 — (Phosphotyrosine protein) phosphatases II |
| 超家族 Superfamily superfamily | c.45.1 — (Phosphotyrosine protein) phosphatases II |
| 家族 Family family | c.45.1.1 — Dual specificity phosphatase-like |
CATH v4.4 (6 domains)
| 结构域编号 domain_id | 1fpzA00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 190 — Protein-Tyrosine Phosphatase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Protein tyrosine phosphatase superfamily |
| 结构域编号 domain_id | 1fpzB00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 190 — Protein-Tyrosine Phosphatase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Protein tyrosine phosphatase superfamily |
| 结构域编号 domain_id | 1fpzC00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 190 — Protein-Tyrosine Phosphatase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Protein tyrosine phosphatase superfamily |
| 结构域编号 domain_id | 1fpzD00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 190 — Protein-Tyrosine Phosphatase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Protein tyrosine phosphatase superfamily |
| 结构域编号 domain_id | 1fpzE00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 190 — Protein-Tyrosine Phosphatase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Protein tyrosine phosphatase superfamily |
| 结构域编号 domain_id | 1fpzF00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 190 — Protein-Tyrosine Phosphatase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Protein tyrosine phosphatase superfamily |