1gyt

E. coli Aminopeptidase A (PepA)

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

CYTOSOL AMINOPEPTIDASE

ESCHERICHIA COLI K-12

UniProt P11648

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 6 ZINC ION × 12 CARBONATE ION × 6 CHLORIDE ION × 2 water × 6 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 6 ZINC ION × 12 CARBONATE ION × 6 CHLORIDE ION × 2 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 AMPA_ECOLI
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–503; UniProt 1–503 作者链 B; PDB构建体 1–503; UniProt 1–503 作者链 C; PDB构建体 1–503; UniProt 1–503 作者链 D; PDB构建体 1–503; UniProt 1–503 作者链 E; PDB构建体 1–503; UniProt 1–503 作者链 F; PDB构建体 1–503; UniProt 1–503 作者链 G; PDB构建体 1–503; UniProt 1–503 作者链 H; PDB构建体 1–503; UniProt 1–503 作者链 I; PDB构建体 1–503; UniProt 1–503 作者链 J; PDB构建体 1–503; UniProt 1–503 作者链 K; PDB构建体 1–503; UniProt 1–503 作者链 L; PDB构建体 1–503; UniProt 1–503

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id1gyt
沉积日期 deposition_date2002-04-29
结构标题 titleE. coli Aminopeptidase A (PepA)
关键词 keywordsHYDROLASE, PEPTIDASE, DNA RECOMBINATION, AMINOPEPTIDASE; HYDROLASE
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1gyt__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1gyt__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1gyt__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)44.63 Å
Rg(电子密度)44.32 Å
总 Rg44.50 Å
原子数23114
残基数3018
排除体积410520 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1gyt__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1gyt__assembly_2__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (5)

6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd1gyta1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gyta2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytb1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytb2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytc1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytc2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytd1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytd2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gyte1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gyte2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytf1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytf2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytg1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytg2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gyth1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gyth2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gyti1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gyti2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytj1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytj2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytk1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytk2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain
结构域编号 domain_idd1gytl1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.50 — Macro domain-like
超家族 Superfamily superfamilyc.50.1 — Macro domain-like
家族 Family familyc.50.1.1 — Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
结构域编号 domain_idd1gytl2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.3 — Leucine aminopeptidase, C-terminal domain

CATH v4.4 (24 domains)

结构域编号 domain_id1gytA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytC01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytC02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytD01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytD02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytE01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytE02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytF01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytF02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytG01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytG02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytH01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytH02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytI01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytI02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytJ01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytJ02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytK01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytK02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id1gytL01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology220 — Leucine Aminopeptidase, subunit E; domain 1
同源超家族 H-superfamily homologous superfamily10 — Leucine Aminopeptidase, subunit E, domain 1
结构域编号 domain_id1gytL02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases

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