1h29

Sulfate respiration in Desulfovibrio vulgaris Hildenborough: Structure of the 16-heme Cytochrome c HmcA at 2.5 A resolution and a view of its role in transmembrane electron transfer

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

HIGH-MOLECULAR-WEIGHT CYTOCHROME C

物种未注明

UniProt P24092

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白单体 单体 蛋白 1 HEME C × 16 water × 1 与蛋白数一致
2 蛋白单体 单体 蛋白 1 HEME C × 16 water × 1 与蛋白数一致
3 蛋白单体 单体 蛋白 1 HEME C × 16 water × 1 与蛋白数一致
4 蛋白单体 单体 蛋白 1 HEME C × 16 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 HMWC_DESVH
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–514; UniProt 32–545 作者链 B; PDB构建体 1–514; UniProt 32–545 作者链 C; PDB构建体 1–514; UniProt 32–545 作者链 D; PDB构建体 1–514; UniProt 32–545

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id1h29
沉积日期 deposition_date2002-08-01
结构标题 titleSulfate respiration in Desulfovibrio vulgaris Hildenborough: Structure of the 16-heme Cytochrome c HmcA at 2.5 A resolution and a view of its role in transmembrane electron transfer
关键词 keywords;ELECTRON TRANSPORT, HIGH MOLECULAR MASS CYTOCHROME, SULFATE RESPIRATION, HYDROGEN CYCLE, TRANSMEMBRANE REDOX COMPLEX, ENERGY CONSERVATION, PROTON GRADIENT, TETRA-HEME, C3-LIKE DOMAIN ;; ELECTRON TRANSPORT
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1h29__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1h29__assembly_1__model_1 | I(q)

10-2 10-1 106 107 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1h29__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)31.31 Å
Rg(电子密度)31.05 Å
总 Rg31.64 Å
原子数4471
残基数501
排除体积79639 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1h29__assembly_1__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1h29__assembly_2__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
3 1 1h29__assembly_3__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
4 1 1h29__assembly_4__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (3)

6. 折叠分类 (SCOP + CATH) 20 domains

SCOP 2.08 (4 domains)

结构域编号 domain_idd1h29a_
类 Class classa — All alpha proteins
折叠类型 Fold folda.138 — Multiheme cytochromes
超家族 Superfamily superfamilya.138.1 — Multiheme cytochromes
家族 Family familya.138.1.1 — Cytochrome c3-like
结构域编号 domain_idd1h29b_
类 Class classa — All alpha proteins
折叠类型 Fold folda.138 — Multiheme cytochromes
超家族 Superfamily superfamilya.138.1 — Multiheme cytochromes
家族 Family familya.138.1.1 — Cytochrome c3-like
结构域编号 domain_idd1h29c_
类 Class classa — All alpha proteins
折叠类型 Fold folda.138 — Multiheme cytochromes
超家族 Superfamily superfamilya.138.1 — Multiheme cytochromes
家族 Family familya.138.1.1 — Cytochrome c3-like
结构域编号 domain_idd1h29d_
类 Class classa — All alpha proteins
折叠类型 Fold folda.138 — Multiheme cytochromes
超家族 Superfamily superfamilya.138.1 — Multiheme cytochromes
家族 Family familya.138.1.1 — Cytochrome c3-like

CATH v4.4 (16 domains)

结构域编号 domain_id1h29A01
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29A02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29A03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29A04
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29B01
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29B02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29B03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29B04
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29C01
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29C02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29C03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29C04
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29D01
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29D02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29D03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3
结构域编号 domain_id1h29D04
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology10 — Cytochrome C3
同源超家族 H-superfamily homologous superfamily10 — Cytochrome C3

7. 引用文献 (1)