1h54
Maltose phosphorylase from Lactobacillus brevis
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1h54 |
| 沉积日期 deposition_date | 2001-05-18 |
| 结构标题 title | Maltose phosphorylase from Lactobacillus brevis |
| 关键词 keywords | HYDROLASE, MALTOSE METABOLISM; HYDROLASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 38.18 Å |
| 回转半径 Rg (电子) rg_electron | 37.72 Å |
| 零角强度 I(0) i0 | 440684000.00 |
| 分子量 molecular_weight | 171290.0 kDa |
| 排除体积 excluded_volume | 213790 ų |
| 包络体积 envelope_volume | 260930 ų |
| 水化壳体积 shell_volume | 56722 ų |
| 包络直径 envelope_diameter | 129.0 Å |
| 壳层 Rg shell_rg | 44.52 Å |
| 包络 Rg envelope_rg | 37.60 Å |
| 形状 Rg shape_rg | 37.68 Å |
| 总 Rg total_rg | 38.24 Å |
| 总原子数 total_atoms | 12107 |
| 残基数 n_residues | 1507 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 124.1 Å |
| Rg (实空间) rg_real | 38.14 Å |
| Rg 误差 (实空间) rg_real_error | 1.07 Å |
| I(0) (实空间) i0_real | 4.4070e+08 |
| I(0) 误差 (实空间) i0_real_error | 7.8290e+06 |
| Rg (倒空间) rg_reciprocal | 38.17 Å |
| I(0) (倒空间) i0_reciprocal | 440700000.0000 |
| 解质量估计 total_estimate | 0.8956 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 42.4 Å |
| 偏度 Skewness skewness | 0.269 |
| 峰度 Kurtosis kurtosis | -0.570 |
| 角度范围 angular_range | — – 0.2050 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 147800000.0000 |
| 实空间数据点数 n_real_points | 42 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.914; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.899 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 12 domains
SCOP 2.08 (6 domains)
| 结构域编号 domain_id | d1h54a1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.102 — alpha/alpha toroid |
| 超家族 Superfamily superfamily | a.102.1 — Six-hairpin glycosidases |
| 家族 Family family | a.102.1.4 — Glycosyltransferase family 36 C-terminal domain |
| 结构域编号 domain_id | d1h54a2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.30 — Supersandwich |
| 超家族 Superfamily superfamily | b.30.5 — Galactose mutarotase-like |
| 家族 Family family | b.30.5.3 — Glycosyltransferase family 36 N-terminal domain |
| 结构域编号 domain_id | d1h54a3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1h54b1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.102 — alpha/alpha toroid |
| 超家族 Superfamily superfamily | a.102.1 — Six-hairpin glycosidases |
| 家族 Family family | a.102.1.4 — Glycosyltransferase family 36 C-terminal domain |
| 结构域编号 domain_id | d1h54b2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.30 — Supersandwich |
| 超家族 Superfamily superfamily | b.30.5 — Galactose mutarotase-like |
| 家族 Family family | b.30.5.3 — Glycosyltransferase family 36 N-terminal domain |
| 结构域编号 domain_id | d1h54b3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
CATH v4.4 (6 domains)
| 结构域编号 domain_id | 1h54A01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 70 — Distorted Sandwich |
| 拓扑 Topology topology | 98 — Beta-galactosidase; Chain A, domain 5 |
| 同源超家族 H-superfamily homologous superfamily | 40 — Glycoside hydrolase, family 65, N-terminal domain |
| 结构域编号 domain_id | 1h54A02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 50 — Alpha/alpha barrel |
| 拓扑 Topology topology | 10 — Glycosyltransferase |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1h54A03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 420 — Maltose phosphorylase, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Maltose phosphorylase, domain 3 |
| 结构域编号 domain_id | 1h54B01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 70 — Distorted Sandwich |
| 拓扑 Topology topology | 98 — Beta-galactosidase; Chain A, domain 5 |
| 同源超家族 H-superfamily homologous superfamily | 40 — Glycoside hydrolase, family 65, N-terminal domain |
| 结构域编号 domain_id | 1h54B02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 50 — Alpha/alpha barrel |
| 拓扑 Topology topology | 10 — Glycosyltransferase |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1h54B03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 420 — Maltose phosphorylase, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Maltose phosphorylase, domain 3 |