1i3r

CRYSTAL STRUCTURE OF A MUTANT IEK CLASS II MHC MOLECULE

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN

Mus musculus

UniProt P04224

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 8 其他聚合物 4 FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN × 4 (P02089) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 4 2-acetamido-2-deoxy-beta-D-glucopyranose × 8 water × 8 与蛋白数一致
2 其他组合 异源复合物 蛋白 2 其他聚合物 1 FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN × 1 (P02089) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
3 其他组合 异源复合物 蛋白 2 其他聚合物 1 FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN × 1 (P02089) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
4 其他组合 异源复合物 蛋白 2 其他聚合物 1 FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN × 1 (P02089) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
5 其他组合 异源复合物 蛋白 2 其他聚合物 1 FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN × 1 (P02089) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
6 其他组合 异源复合物 蛋白 4 其他聚合物 2 FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN × 2 (P02089) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 water × 4 与蛋白数一致
7 其他组合 异源复合物 蛋白 4 其他聚合物 2 FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN × 2 (P02089) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 HA22_MOUSE
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–192; UniProt 26–217 作者链 C; PDB构建体 1–192; UniProt 26–217 作者链 E; PDB构建体 1–192; UniProt 26–217 作者链 G; PDB构建体 1–192; UniProt 26–217

FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN

Mus musculus

UniProt P02089

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 8 其他聚合物 4 H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN × 4 (P04224) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 4 2-acetamido-2-deoxy-beta-D-glucopyranose × 8 water × 8 与蛋白数一致
2 其他组合 异源复合物 蛋白 2 其他聚合物 1 H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN × 1 (P04224) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
3 其他组合 异源复合物 蛋白 2 其他聚合物 1 H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN × 1 (P04224) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
4 其他组合 异源复合物 蛋白 2 其他聚合物 1 H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN × 1 (P04224) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
5 其他组合 异源复合物 蛋白 2 其他聚合物 1 H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN × 1 (P04224) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 water × 2 与蛋白数一致
6 其他组合 异源复合物 蛋白 4 其他聚合物 2 H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN × 2 (P04224) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 water × 4 与蛋白数一致
7 其他组合 异源复合物 蛋白 4 其他聚合物 2 H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN × 2 (P04224) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 HBB2_MOUSE
Isoform
PDB实体 2
链与序列区间 作者链 B; PDB构建体 5–17; UniProt 64–76 作者链 D; PDB构建体 5–17; UniProt 64–76 作者链 F; PDB构建体 5–17; UniProt 64–76 作者链 H; PDB构建体 5–17; UniProt 64–76

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id1i3r
沉积日期 deposition_date2001-02-15
结构标题 titleCRYSTAL STRUCTURE OF A MUTANT IEK CLASS II MHC MOLECULE
关键词 keywordsMHC ClassII, IMMUNE SYSTEM; IMMUNE SYSTEM
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1i3r__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1i3r__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1i3r__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)40.51 Å
Rg(电子密度)40.18 Å
总 Rg40.53 Å
原子数13006
残基数1592
排除体积229350 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1i3r__assembly_1__model_1 octameric (8) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1i3r__assembly_2__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
3 1 1i3r__assembly_3__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
4 1 1i3r__assembly_4__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
5 1 1i3r__assembly_5__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
6 1 1i3r__assembly_6__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
7 1 1i3r__assembly_7__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (5)

6. 折叠分类 (SCOP + CATH) 32 domains

SCOP 2.08 (16 domains)

结构域编号 domain_idd1i3ra1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3ra2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain
结构域编号 domain_idd1i3rb1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3rb2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain
结构域编号 domain_idd1i3rc1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3rc2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain
结构域编号 domain_idd1i3rd1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3rd2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain
结构域编号 domain_idd1i3re1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3re2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain
结构域编号 domain_idd1i3rf1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3rf2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain
结构域编号 domain_idd1i3rg1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3rg2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain
结构域编号 domain_idd1i3rh1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.1 — Immunoglobulin
家族 Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
结构域编号 domain_idd1i3rh2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.19 — MHC antigen-recognition domain
超家族 Superfamily superfamilyd.19.1 — MHC antigen-recognition domain
家族 Family familyd.19.1.1 — MHC antigen-recognition domain

CATH v4.4 (16 domains)

结构域编号 domain_id1i3rA01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rA02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1i3rB01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rB02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1i3rC01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rC02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1i3rD01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rD02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1i3rE01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rE02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1i3rF01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rF02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1i3rG01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rG02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1i3rH01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology320 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
结构域编号 domain_id1i3rH02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins

7. 引用文献 (1)