1iw8
Crystal Structure of a mutant of acid phosphatase from Escherichia blattae (G74D/I153T)
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1iw8 |
| 沉积日期 deposition_date | 2002-04-22 |
| 结构标题 title | Crystal Structure of a mutant of acid phosphatase from Escherichia blattae (G74D/I153T) |
| 关键词 keywords | ALL ALPHA, HYDROLASE; HYDROLASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 36.12 Å |
| 回转半径 Rg (电子) rg_electron | 35.63 Å |
| 零角强度 I(0) i0 | 323746000.00 |
| 分子量 molecular_weight | 140990.0 kDa |
| 排除体积 excluded_volume | 174390 ų |
| 包络体积 envelope_volume | 217160 ų |
| 水化壳体积 shell_volume | 50784 ų |
| 包络直径 envelope_diameter | 121.3 Å |
| 壳层 Rg shell_rg | 41.83 Å |
| 包络 Rg envelope_rg | 35.55 Å |
| 形状 Rg shape_rg | 35.62 Å |
| 总 Rg total_rg | 36.04 Å |
| 总原子数 total_atoms | 9927 |
| 残基数 n_residues | 1298 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 112.0 Å |
| Rg (实空间) rg_real | 35.99 Å |
| Rg 误差 (实空间) rg_real_error | 0.68 Å |
| I(0) (实空间) i0_real | 3.2370e+08 |
| I(0) 误差 (实空间) i0_real_error | 5.0930e+06 |
| Rg (倒空间) rg_reciprocal | 36.08 Å |
| I(0) (倒空间) i0_reciprocal | 323800000.0000 |
| 解质量估计 total_estimate | 0.9109 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 40.7 Å |
| 偏度 Skewness skewness | 0.133 |
| 峰度 Kurtosis kurtosis | -0.677 |
| 角度范围 angular_range | — – 0.2200 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 59810000.0000 |
| 实空间数据点数 n_real_points | 45 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.958; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.963 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 12 domains
SCOP 2.08 (6 domains)
| 结构域编号 domain_id | d1iw8a_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.111 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 超家族 Superfamily superfamily | a.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 家族 Family family | a.111.1.1 — Type 2 phosphatidic acid phosphatase, PAP2 |
| 结构域编号 domain_id | d1iw8b_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.111 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 超家族 Superfamily superfamily | a.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 家族 Family family | a.111.1.1 — Type 2 phosphatidic acid phosphatase, PAP2 |
| 结构域编号 domain_id | d1iw8c_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.111 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 超家族 Superfamily superfamily | a.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 家族 Family family | a.111.1.1 — Type 2 phosphatidic acid phosphatase, PAP2 |
| 结构域编号 domain_id | d1iw8d_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.111 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 超家族 Superfamily superfamily | a.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 家族 Family family | a.111.1.1 — Type 2 phosphatidic acid phosphatase, PAP2 |
| 结构域编号 domain_id | d1iw8e_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.111 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 超家族 Superfamily superfamily | a.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 家族 Family family | a.111.1.1 — Type 2 phosphatidic acid phosphatase, PAP2 |
| 结构域编号 domain_id | d1iw8f_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.111 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 超家族 Superfamily superfamily | a.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase |
| 家族 Family family | a.111.1.1 — Type 2 phosphatidic acid phosphatase, PAP2 |
CATH v4.4 (6 domains)
| 结构域编号 domain_id | 1iw8A00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 144 — Vanadium-containing Chloroperoxidase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Phosphatidic acid phosphatase type 2/haloperoxidase |
| 结构域编号 domain_id | 1iw8B00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 144 — Vanadium-containing Chloroperoxidase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Phosphatidic acid phosphatase type 2/haloperoxidase |
| 结构域编号 domain_id | 1iw8C00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 144 — Vanadium-containing Chloroperoxidase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Phosphatidic acid phosphatase type 2/haloperoxidase |
| 结构域编号 domain_id | 1iw8D00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 144 — Vanadium-containing Chloroperoxidase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Phosphatidic acid phosphatase type 2/haloperoxidase |
| 结构域编号 domain_id | 1iw8E00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 144 — Vanadium-containing Chloroperoxidase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Phosphatidic acid phosphatase type 2/haloperoxidase |
| 结构域编号 domain_id | 1iw8F00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 144 — Vanadium-containing Chloroperoxidase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Phosphatidic acid phosphatase type 2/haloperoxidase |