1j1h

Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus

Method: SOLUTION NMR
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Small Protein B

Thermus thermophilus

UniProt Q8RR57

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SSRP_THET8
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–144; UniProt 1–144

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1j1h
Deposition date deposition_date2002-12-04
Structure title titleSolution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
Keywords keywords;SMPB, SSRA ASSOCIATED PROTEIN, OB FOLD, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, RNA BINDING PROTEIN ;; RNA BINDING PROTEIN
Experimental Method methodSOLUTION NMR
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1j1h__assembly_1__model_9

Assembly 1 · Model 9 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1j1h__assembly_1__model_9 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1j1h__assembly_1__model_9 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)16.05 Å
Rg (electron density)14.62 Å
Total Rg15.92 Å
Atom count2042
Residues123
Excluded volume17994 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1j1h__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 1j1h__assembly_1__model_2 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 1j1h__assembly_1__model_3 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 1j1h__assembly_1__model_4 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 5 1j1h__assembly_1__model_5 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 6 1j1h__assembly_1__model_6 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 7 1j1h__assembly_1__model_7 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 8 1j1h__assembly_1__model_8 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 9 1j1h__assembly_1__model_9 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 10 1j1h__assembly_1__model_10 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
1 11 1j1h__assembly_1__model_11 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1j1ha_
Class classb — All beta proteins
Fold Fold foldb.111 — Small protein B (SmpB)
Superfamily Superfamily superfamilyb.111.1 — Small protein B (SmpB)
Family Family familyb.111.1.1 — Small protein B (SmpB)

CATH v4.4 (1 domains)

Domain ID domain_id1j1hA00
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology280 — Small Protein B; Chain: A;
Homologous superfamily homologous superfamily10 — Small protein B
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7. Citations (1)