1jix

T4 Phage BGT in Complex with Ca2+

Method: X-RAY DIFFRACTION Dmax: 73.3 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA BETA-GLUCOSYLTRANSFERASE

Enterobacteria phage T4

UniProt P04547

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–351 Not recorded CA CALCIUM ION × 1 UDP URIDINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;PEG 10000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K Resolution 1.65 Å R-free 0.214

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 22 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GSTB_BPT4
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–351; UniProt 1–351

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1jix

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1jix
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id1jix
Deposition date deposition_date2001-07-03
Structure title titleT4 Phage BGT in Complex with Ca2+
Keywords keywordsGlycosyltransferase, TRANSFERASE; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.88
Radius of gyration Rg (electron density) rg_electron21.04
Forward intensity I(0) i026662000.00
Molecular weight molecular_weight41099.0 kDa
Excluded volume excluded_volume52062 ų
Envelope volume envelope_volume59597 ų
Hydration-shell volume shell_volume23552 ų
Envelope diameter envelope_diameter74.7
Shell Rg shell_rg27.74
Envelope Rg envelope_rg21.15
Shape Rg shape_rg21.05
Total Rg total_rg21.87
Total atoms total_atoms2895
Residues n_residues351
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax73.3
Rg (real space) rg_real21.82
Rg uncertainty (real space) rg_real_error0.61
I(0) (real space) i0_real2.6660e+07
I(0) uncertainty (real space) i0_real_error4.3840e+05
Rg (reciprocal space) rg_reciprocal21.83
I(0) (reciprocal space) i0_reciprocal26660000.0000
Solution quality estimate total_estimate0.7974
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.3
Skewness Skewness skewness0.317
Kurtosis Kurtosis kurtosis-0.320
Angular range angular_range— – 0.3650 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8198000.0000
Real-space data points n_real_points68
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.796; Stabil: 0.996; Sysdev: 1.000; Positv: 1.000; Valcen: 0.987; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1jixa_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.87 — UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily Superfamily superfamilyc.87.1 — UDP-Glycosyltransferase/glycogen phosphorylase
Family Family familyc.87.1.1 — beta-Glucosyltransferase (DNA-modifying)

CATH v4.4 (2 domains)

Domain ID domain_id1jixA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily2000 — Glycogen Phosphorylase B;
Domain ID domain_id1jixA02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily2000 — Glycogen Phosphorylase B;

8. Citations (2)

9. Files and Curves (10)