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1jmz

crystal structure of a quinohemoprotein amine dehydrogenase from pseudomonas putida with inhibitor

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Amine Dehydrogenase

OrganismNot specified

UniProt Q8VW85

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Amine Dehydrogenase × 1 （Q8VW82） Amine Dehydrogenase × 1 （P0A182） NICKEL (II) ION × 1 HEME C × 2 P-NITROPHENYLHYDRAZINE × 1 water × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 Amine Dehydrogenase × 2 （Q8VW82） Amine Dehydrogenase × 2 （P0A182） NICKEL (II) ION × 2 HEME C × 4 P-NITROPHENYLHYDRAZINE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1jmx 1jmx 1jmz 1jmz

4 assemblies

View Construct and Data Evidence
UniProt name Q8VW85_PSEPU
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–494； UniProt 49–542

Amine Dehydrogenase

OrganismNot specified

UniProt Q8VW82

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Amine Dehydrogenase × 1 （Q8VW85） Amine Dehydrogenase × 1 （P0A182） NICKEL (II) ION × 1 HEME C × 2 P-NITROPHENYLHYDRAZINE × 1 water × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 Amine Dehydrogenase × 2 （Q8VW85） Amine Dehydrogenase × 2 （P0A182） NICKEL (II) ION × 2 HEME C × 4 P-NITROPHENYLHYDRAZINE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1jmx 1jmx 1jmz 1jmz

4 assemblies

View Construct and Data Evidence
UniProt name Q8VW82_PSEPU
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B； PDBConstruct 1–349； UniProt 31–379

Amine Dehydrogenase

OrganismNot specified

UniProt P0A182

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Amine Dehydrogenase × 1 （Q8VW85） Amine Dehydrogenase × 1 （Q8VW82） NICKEL (II) ION × 1 HEME C × 2 P-NITROPHENYLHYDRAZINE × 1 water × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 Amine Dehydrogenase × 2 （Q8VW85） Amine Dehydrogenase × 2 （Q8VW82） NICKEL (II) ION × 2 HEME C × 4 P-NITROPHENYLHYDRAZINE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1jmx 1jmx 1jmz 1jmz

4 assemblies

View Construct and Data Evidence
UniProt name QADG_PSEPU
Isoform —
PDB entities 3
Chains and sequence ranges Author chain G； PDBConstruct 2–79； UniProt 1–78

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1jmz
Deposition date deposition_date2001-07-20
Structure title titlecrystal structure of a quinohemoprotein amine dehydrogenase from pseudomonas putida with inhibitor
Keywords keywordsAmine Dehydrogenase, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1jmz__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1jmz__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1jmz__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）31.16 Å
Rg (electron density)30.77 Å
Total Rg31.43 Å
Atom count7164
Residues908
Excluded volume126800 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1jmz__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 1jmz__assembly_2__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (7)

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6. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (7 domains)

Domain ID domain_idd1jmza1
Class classa — All alpha proteins
Fold Fold folda.3 — Cytochrome c
Superfamily Superfamily superfamilya.3.1 — Cytochrome c
Family Family familya.3.1.7 — Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
Domain ID domain_idd1jmza2
Class classa — All alpha proteins
Fold Fold folda.3 — Cytochrome c
Superfamily Superfamily superfamilya.3.1 — Cytochrome c
Family Family familya.3.1.7 — Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
Domain ID domain_idd1jmza3
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.18 — E set domains
Family Family familyb.1.18.14 — Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
Domain ID domain_idd1jmza4
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.18 — E set domains
Family Family familyb.1.18.14 — Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
Domain ID domain_idd1jmza5
Class classb — All beta proteins
Fold Fold foldb.61 — Streptavidin-like
Superfamily Superfamily superfamilyb.61.4 — Quinohemoprotein amine dehydrogenase A chain, domain 3
Family Family familyb.61.4.1 — Quinohemoprotein amine dehydrogenase A chain, domain 3
Domain ID domain_idd1jmzb_
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.2 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Family Family familyb.69.2.2 — Quinohemoprotein amine dehydrogenase B chain
Domain ID domain_idd1jmzg_
Class classa — All alpha proteins
Fold Fold folda.137 — Non-globular all-alpha subunits of globular proteins
Superfamily Superfamily superfamilya.137.9 — Quinohemoprotein amine dehydrogenase C chain
Family Family familya.137.9.1 — Quinohemoprotein amine dehydrogenase C chain

CATH v4.4 (5 domains)

Domain ID domain_id1jmzA02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology128 — Lipocalin
Homologous superfamily homologous superfamily120 — Quinohemoprotein amine dehydrogenase alpha subunit, domain 2
Domain ID domain_id1jmzA03
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id1jmzA04
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id1jmzB00
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id1jmzG00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology940 — Quinohemoprotein amine dehydrogenase
Homologous superfamily homologous superfamily10 — Quinohemoprotein amine dehydrogenase, gamma subunit structural domain
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7. Citations (1)