1lbu

HYDROLASE METALLO (ZN) DD-PEPTIDASE

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE

OrganismNot specified

UniProt P00733

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 ZINC ION × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CBPM_STRAL
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–213; UniProt 43–255

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id1lbu
Deposition date deposition_date1996-03-16
Structure title titleHYDROLASE METALLO (ZN) DD-PEPTIDASE
Keywords keywordsHYDROLASE, NUCLEAR RECEPTOR, CARBOXYPEPTIDASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1lbu__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1lbu__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1lbu__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)17.59 Å
Rg (electron density)16.57 Å
Total Rg17.49 Å
Atom count1556
Residues213
Excluded volume26982 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1lbu__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (3)

▼

6. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1lbua1
Class classa — All alpha proteins
Fold Fold folda.20 — PGBD-like
Superfamily Superfamily superfamilya.20.1 — PGBD-like
Family Family familya.20.1.1 — Peptidoglycan binding domain, PGBD
Domain ID domain_idd1lbua2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.65 — Hedgehog/DD-peptidase
Superfamily Superfamily superfamilyd.65.1 — Hedgehog/DD-peptidase
Family Family familyd.65.1.1 — Muramoyl-pentapeptide carboxypeptidase

CATH v4.4 (2 domains)

Domain ID domain_id1lbuA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology101 — Muramoyl-pentapeptide Carboxypeptidase; domain 1
Homologous superfamily homologous superfamily10 — PGBD-like superfamily/PGBD
Domain ID domain_id1lbuA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1380 — Muramoyl-pentapeptide Carboxypeptidase; domain 2
Homologous superfamily homologous superfamily10 —
▶

7. Citations (3)