1n6e

tricorn protease in complex with a tridecapeptide chloromethyl ketone derivative

Method: X-RAY DIFFRACTION
▼

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Tricorn protease

Thermoplasma acidophilum

UniProt P96086

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 12 DQTQKAAAELTFF × 6 water × 12 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TRI_THEAC
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–1071; UniProt 1–1071 作者链 C; PDB构建体 1–1071; UniProt 1–1071 作者链 E; PDB构建体 1–1071; UniProt 1–1071 作者链 G; PDB构建体 1–1071; UniProt 1–1071 作者链 I; PDB构建体 1–1071; UniProt 1–1071 作者链 K; PDB构建体 1–1071; UniProt 1–1071

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

▼

2. 结构基本信息 2. Structure Basics

条目编号 entry_id1n6e
沉积日期 deposition_date2002-11-10
结构标题 titletricorn protease in complex with a tridecapeptide chloromethyl ketone derivative
关键词 keywordstricorn protease, hydrolase, propeller; HYDROLASE
实验方法 methodX-RAY DIFFRACTION
▼

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1n6e__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1n6e__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1n6e__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)59.87 Å
Rg(电子密度)59.29 Å
总 Rg59.37 Å
原子数49584
残基数6204
排除体积879200 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1n6e__assembly_1__model_1 dodecameric (12) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
▶

4. 晶体学与实验 4. Crystallography & Experiment

▶

5. 实体与聚合物信息 Entities & Polymers (3)

▼

6. 折叠分类 (SCOP + CATH) 54 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd1n6ea1
类 Class classb — All beta proteins
折叠类型 Fold foldb.36 — PDZ domain-like
超家族 Superfamily superfamilyb.36.1 — PDZ domain-like
家族 Family familyb.36.1.3 — Tail specific protease PDZ domain
结构域编号 domain_idd1n6ea2
类 Class classb — All beta proteins
折叠类型 Fold foldb.68 — 6-bladed beta-propeller
超家族 Superfamily superfamilyb.68.7 — Tricorn protease N-terminal domain
家族 Family familyb.68.7.1 — Tricorn protease N-terminal domain
结构域编号 domain_idd1n6ea3
类 Class classb — All beta proteins
折叠类型 Fold foldb.69 — 7-bladed beta-propeller
超家族 Superfamily superfamilyb.69.9 — Tricorn protease domain 2
家族 Family familyb.69.9.1 — Tricorn protease domain 2
结构域编号 domain_idd1n6ea4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.14 — ClpP/crotonase
超家族 Superfamily superfamilyc.14.1 — ClpP/crotonase
家族 Family familyc.14.1.2 — Tail specific protease, catalytic domain
结构域编号 domain_idd1n6ec1
类 Class classb — All beta proteins
折叠类型 Fold foldb.36 — PDZ domain-like
超家族 Superfamily superfamilyb.36.1 — PDZ domain-like
家族 Family familyb.36.1.3 — Tail specific protease PDZ domain
结构域编号 domain_idd1n6ec2
类 Class classb — All beta proteins
折叠类型 Fold foldb.68 — 6-bladed beta-propeller
超家族 Superfamily superfamilyb.68.7 — Tricorn protease N-terminal domain
家族 Family familyb.68.7.1 — Tricorn protease N-terminal domain
结构域编号 domain_idd1n6ec3
类 Class classb — All beta proteins
折叠类型 Fold foldb.69 — 7-bladed beta-propeller
超家族 Superfamily superfamilyb.69.9 — Tricorn protease domain 2
家族 Family familyb.69.9.1 — Tricorn protease domain 2
结构域编号 domain_idd1n6ec4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.14 — ClpP/crotonase
超家族 Superfamily superfamilyc.14.1 — ClpP/crotonase
家族 Family familyc.14.1.2 — Tail specific protease, catalytic domain
结构域编号 domain_idd1n6ee1
类 Class classb — All beta proteins
折叠类型 Fold foldb.36 — PDZ domain-like
超家族 Superfamily superfamilyb.36.1 — PDZ domain-like
家族 Family familyb.36.1.3 — Tail specific protease PDZ domain
结构域编号 domain_idd1n6ee2
类 Class classb — All beta proteins
折叠类型 Fold foldb.68 — 6-bladed beta-propeller
超家族 Superfamily superfamilyb.68.7 — Tricorn protease N-terminal domain
家族 Family familyb.68.7.1 — Tricorn protease N-terminal domain
结构域编号 domain_idd1n6ee3
类 Class classb — All beta proteins
折叠类型 Fold foldb.69 — 7-bladed beta-propeller
超家族 Superfamily superfamilyb.69.9 — Tricorn protease domain 2
家族 Family familyb.69.9.1 — Tricorn protease domain 2
结构域编号 domain_idd1n6ee4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.14 — ClpP/crotonase
超家族 Superfamily superfamilyc.14.1 — ClpP/crotonase
家族 Family familyc.14.1.2 — Tail specific protease, catalytic domain
结构域编号 domain_idd1n6eg1
类 Class classb — All beta proteins
折叠类型 Fold foldb.36 — PDZ domain-like
超家族 Superfamily superfamilyb.36.1 — PDZ domain-like
家族 Family familyb.36.1.3 — Tail specific protease PDZ domain
结构域编号 domain_idd1n6eg2
类 Class classb — All beta proteins
折叠类型 Fold foldb.68 — 6-bladed beta-propeller
超家族 Superfamily superfamilyb.68.7 — Tricorn protease N-terminal domain
家族 Family familyb.68.7.1 — Tricorn protease N-terminal domain
结构域编号 domain_idd1n6eg3
类 Class classb — All beta proteins
折叠类型 Fold foldb.69 — 7-bladed beta-propeller
超家族 Superfamily superfamilyb.69.9 — Tricorn protease domain 2
家族 Family familyb.69.9.1 — Tricorn protease domain 2
结构域编号 domain_idd1n6eg4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.14 — ClpP/crotonase
超家族 Superfamily superfamilyc.14.1 — ClpP/crotonase
家族 Family familyc.14.1.2 — Tail specific protease, catalytic domain
结构域编号 domain_idd1n6ei1
类 Class classb — All beta proteins
折叠类型 Fold foldb.36 — PDZ domain-like
超家族 Superfamily superfamilyb.36.1 — PDZ domain-like
家族 Family familyb.36.1.3 — Tail specific protease PDZ domain
结构域编号 domain_idd1n6ei2
类 Class classb — All beta proteins
折叠类型 Fold foldb.68 — 6-bladed beta-propeller
超家族 Superfamily superfamilyb.68.7 — Tricorn protease N-terminal domain
家族 Family familyb.68.7.1 — Tricorn protease N-terminal domain
结构域编号 domain_idd1n6ei3
类 Class classb — All beta proteins
折叠类型 Fold foldb.69 — 7-bladed beta-propeller
超家族 Superfamily superfamilyb.69.9 — Tricorn protease domain 2
家族 Family familyb.69.9.1 — Tricorn protease domain 2
结构域编号 domain_idd1n6ei4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.14 — ClpP/crotonase
超家族 Superfamily superfamilyc.14.1 — ClpP/crotonase
家族 Family familyc.14.1.2 — Tail specific protease, catalytic domain
结构域编号 domain_idd1n6ek1
类 Class classb — All beta proteins
折叠类型 Fold foldb.36 — PDZ domain-like
超家族 Superfamily superfamilyb.36.1 — PDZ domain-like
家族 Family familyb.36.1.3 — Tail specific protease PDZ domain
结构域编号 domain_idd1n6ek2
类 Class classb — All beta proteins
折叠类型 Fold foldb.68 — 6-bladed beta-propeller
超家族 Superfamily superfamilyb.68.7 — Tricorn protease N-terminal domain
家族 Family familyb.68.7.1 — Tricorn protease N-terminal domain
结构域编号 domain_idd1n6ek3
类 Class classb — All beta proteins
折叠类型 Fold foldb.69 — 7-bladed beta-propeller
超家族 Superfamily superfamilyb.69.9 — Tricorn protease domain 2
家族 Family familyb.69.9.1 — Tricorn protease domain 2
结构域编号 domain_idd1n6ek4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.14 — ClpP/crotonase
超家族 Superfamily superfamilyc.14.1 — ClpP/crotonase
家族 Family familyc.14.1.2 — Tail specific protease, catalytic domain

CATH v4.4 (30 domains)

结构域编号 domain_id1n6eA01
类 Class class2 — Mainly Beta
架构 Architecture architecture120 — 6 Propeller
拓扑 Topology topology10 — Neuraminidase
同源超家族 H-superfamily homologous superfamily60 — Tricorn protease N-terminal domain
结构域编号 domain_id1n6eA02
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id1n6eA03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology750 — Transcription Regulator spoIIAA
同源超家族 H-superfamily homologous superfamily44 —
结构域编号 domain_id1n6eA04
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology42 — Pdz3 Domain
同源超家族 H-superfamily homologous superfamily10 — PDZ domain
结构域编号 domain_id1n6eA05
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
结构域编号 domain_id1n6eC01
类 Class class2 — Mainly Beta
架构 Architecture architecture120 — 6 Propeller
拓扑 Topology topology10 — Neuraminidase
同源超家族 H-superfamily homologous superfamily60 — Tricorn protease N-terminal domain
结构域编号 domain_id1n6eC02
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id1n6eC03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology750 — Transcription Regulator spoIIAA
同源超家族 H-superfamily homologous superfamily44 —
结构域编号 domain_id1n6eC04
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology42 — Pdz3 Domain
同源超家族 H-superfamily homologous superfamily10 — PDZ domain
结构域编号 domain_id1n6eC05
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
结构域编号 domain_id1n6eE01
类 Class class2 — Mainly Beta
架构 Architecture architecture120 — 6 Propeller
拓扑 Topology topology10 — Neuraminidase
同源超家族 H-superfamily homologous superfamily60 — Tricorn protease N-terminal domain
结构域编号 domain_id1n6eE02
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id1n6eE03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology750 — Transcription Regulator spoIIAA
同源超家族 H-superfamily homologous superfamily44 —
结构域编号 domain_id1n6eE04
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology42 — Pdz3 Domain
同源超家族 H-superfamily homologous superfamily10 — PDZ domain
结构域编号 domain_id1n6eE05
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
结构域编号 domain_id1n6eG01
类 Class class2 — Mainly Beta
架构 Architecture architecture120 — 6 Propeller
拓扑 Topology topology10 — Neuraminidase
同源超家族 H-superfamily homologous superfamily60 — Tricorn protease N-terminal domain
结构域编号 domain_id1n6eG02
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id1n6eG03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology750 — Transcription Regulator spoIIAA
同源超家族 H-superfamily homologous superfamily44 —
结构域编号 domain_id1n6eG04
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology42 — Pdz3 Domain
同源超家族 H-superfamily homologous superfamily10 — PDZ domain
结构域编号 domain_id1n6eG05
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
结构域编号 domain_id1n6eI01
类 Class class2 — Mainly Beta
架构 Architecture architecture120 — 6 Propeller
拓扑 Topology topology10 — Neuraminidase
同源超家族 H-superfamily homologous superfamily60 — Tricorn protease N-terminal domain
结构域编号 domain_id1n6eI02
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id1n6eI03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology750 — Transcription Regulator spoIIAA
同源超家族 H-superfamily homologous superfamily44 —
结构域编号 domain_id1n6eI04
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology42 — Pdz3 Domain
同源超家族 H-superfamily homologous superfamily10 — PDZ domain
结构域编号 domain_id1n6eI05
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
结构域编号 domain_id1n6eK01
类 Class class2 — Mainly Beta
架构 Architecture architecture120 — 6 Propeller
拓扑 Topology topology10 — Neuraminidase
同源超家族 H-superfamily homologous superfamily60 — Tricorn protease N-terminal domain
结构域编号 domain_id1n6eK02
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id1n6eK03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology750 — Transcription Regulator spoIIAA
同源超家族 H-superfamily homologous superfamily44 —
结构域编号 domain_id1n6eK04
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology42 — Pdz3 Domain
同源超家族 H-superfamily homologous superfamily10 — PDZ domain
结构域编号 domain_id1n6eK05
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
▶

7. 引用文献 (1)