1n8y
Crystal structure of the extracellular region of rat HER2
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1n8y |
| 沉积日期 deposition_date | 2002-11-21 |
| 结构标题 title | Crystal structure of the extracellular region of rat HER2 |
| 关键词 keywords | tyrosin kinase receptor, cell surface receptor, TRANSFERASE; TRANSFERASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 32.73 Å |
| 回转半径 Rg (电子) rg_electron | 32.66 Å |
| 零角强度 I(0) i0 | 79677800.00 |
| 分子量 molecular_weight | 66644.0 kDa |
| 排除体积 excluded_volume | 81792 ų |
| 包络体积 envelope_volume | 114300 ų |
| 水化壳体积 shell_volume | 31898 ų |
| 包络直径 envelope_diameter | 126.8 Å |
| 壳层 Rg shell_rg | 35.76 Å |
| 包络 Rg envelope_rg | 33.75 Å |
| 形状 Rg shape_rg | 32.61 Å |
| 总 Rg total_rg | 33.08 Å |
| 总原子数 total_atoms | 4648 |
| 残基数 n_residues | 592 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 118.0 Å |
| Rg (实空间) rg_real | 33.23 Å |
| Rg 误差 (实空间) rg_real_error | 1.37 Å |
| I(0) (实空间) i0_real | 7.9680e+07 |
| I(0) 误差 (实空间) i0_real_error | 1.3640e+06 |
| Rg (倒空间) rg_reciprocal | 33.02 Å |
| I(0) (倒空间) i0_reciprocal | 79660000.0000 |
| 解质量估计 total_estimate | 0.7974 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 31.9 Å |
| 偏度 Skewness skewness | 0.699 |
| 峰度 Kurtosis kurtosis | 0.227 |
| 角度范围 angular_range | — – 0.2400 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 6962000.0000 |
| 实空间数据点数 n_real_points | 49 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.684; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.696; Smooth: 0.613 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 8 domains
SCOP 2.08 (4 domains)
| 结构域编号 domain_id | d1n8yc1 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.10 — Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |
| 超家族 Superfamily superfamily | c.10.2 — L domain-like |
| 家族 Family family | c.10.2.5 — L domain |
| 结构域编号 domain_id | d1n8yc2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.10 — Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |
| 超家族 Superfamily superfamily | c.10.2 — L domain-like |
| 家族 Family family | c.10.2.5 — L domain |
| 结构域编号 domain_id | d1n8yc3 |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.3 — Knottins (small inhibitors, toxins, lectins) |
| 超家族 Superfamily superfamily | g.3.9 — Growth factor receptor domain |
| 家族 Family family | g.3.9.1 — Growth factor receptor domain |
| 结构域编号 domain_id | d1n8yc4 |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.3 — Knottins (small inhibitors, toxins, lectins) |
| 超家族 Superfamily superfamily | g.3.9 — Growth factor receptor domain |
| 家族 Family family | g.3.9.1 — Growth factor receptor domain |
CATH v4.4 (4 domains)
| 结构域编号 domain_id | 1n8yC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 80 — Alpha-Beta Horseshoe |
| 拓扑 Topology topology | 20 — 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 20 — Receptor L-domain |
| 结构域编号 domain_id | 1n8yC02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 220 — Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2 |
| 结构域编号 domain_id | 1n8yC03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 80 — Alpha-Beta Horseshoe |
| 拓扑 Topology topology | 20 — 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 20 — Receptor L-domain |
| 结构域编号 domain_id | 1n8yC04 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 220 — Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2 |