1nbw

Glycerol dehydratase reactivase

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

GLYCEROL DEHYDRATASE REACTIVASE ALPHA SUBUNIT

Klebsiella pneumoniae

UniProt Q59474

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 4 GLYCEROL DEHYDRATASE REACTIVASE BETA SUBUNIT × 2 (Q48423) CALCIUM ION × 2 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q59474_KLEPN
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–607; UniProt 1–607 作者链 C; PDB构建体 1–607; UniProt 1–607

GLYCEROL DEHYDRATASE REACTIVASE BETA SUBUNIT

Klebsiella pneumoniae

UniProt Q48423

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 4 GLYCEROL DEHYDRATASE REACTIVASE ALPHA SUBUNIT × 2 (Q59474) CALCIUM ION × 2 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q48423_KLEPN
Isoform —
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–117; UniProt 1–117 作者链 D; PDB构建体 1–117; UniProt 1–117

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1nbw
沉积日期 deposition_date2002-12-04
结构标题 titleGlycerol dehydratase reactivase
关键词 keywordsGlycerol dehydratase, Reactivase, Molecular chaperone, Actin-like ATPase domain, beta/beta/alpha swiveling domain, HYDROLASE; HYDROLASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1nbw__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1nbw__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1nbw__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)37.47 Å
Rg(电子密度)36.64 Å
总 Rg37.00 Å
原子数10520
残基数1436
排除体积188140 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1nbw__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 20 domains

SCOP 2.08 (8 domains)

结构域编号 domain_idd1nbwa1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.8 — The 'swivelling' beta/beta/alpha domain
超家族 Superfamily superfamilyc.8.6 — Swiveling domain of dehydratase reactivase alpha subunit
家族 Family familyc.8.6.1 — Swiveling domain of dehydratase reactivase alpha subunit
结构域编号 domain_idd1nbwa2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.55 — Ribonuclease H-like motif
超家族 Superfamily superfamilyc.55.1 — Actin-like ATPase domain
家族 Family familyc.55.1.6 — ATPase domain of dehydratase reactivase alpha subunit
结构域编号 domain_idd1nbwa3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.55 — Ribonuclease H-like motif
超家族 Superfamily superfamilyc.55.1 — Actin-like ATPase domain
家族 Family familyc.55.1.6 — ATPase domain of dehydratase reactivase alpha subunit
结构域编号 domain_idd1nbwb_
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.51 — Anticodon-binding domain-like
超家族 Superfamily superfamilyc.51.3 — B12-dependent dehydatase associated subunit
家族 Family familyc.51.3.2 — Dehydratase-reactivating factor beta subunit
结构域编号 domain_idd1nbwc1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.8 — The 'swivelling' beta/beta/alpha domain
超家族 Superfamily superfamilyc.8.6 — Swiveling domain of dehydratase reactivase alpha subunit
家族 Family familyc.8.6.1 — Swiveling domain of dehydratase reactivase alpha subunit
结构域编号 domain_idd1nbwc2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.55 — Ribonuclease H-like motif
超家族 Superfamily superfamilyc.55.1 — Actin-like ATPase domain
家族 Family familyc.55.1.6 — ATPase domain of dehydratase reactivase alpha subunit
结构域编号 domain_idd1nbwc3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.55 — Ribonuclease H-like motif
超家族 Superfamily superfamilyc.55.1 — Actin-like ATPase domain
家族 Family familyc.55.1.6 — ATPase domain of dehydratase reactivase alpha subunit
结构域编号 domain_idd1nbwd_
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.51 — Anticodon-binding domain-like
超家族 Superfamily superfamilyc.51.3 — B12-dependent dehydatase associated subunit
家族 Family familyc.51.3.2 — Dehydratase-reactivating factor beta subunit

CATH v4.4 (12 domains)

结构域编号 domain_id1nbwA01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id1nbwA02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology470 — Ribosomal Protein L22; Chain A
同源超家族 H-superfamily homologous superfamily30 — Coenzyme B12-Dependent Enzyme linker domain
结构域编号 domain_id1nbwA03
类 Class class3 — Alpha Beta
架构 Architecture architecture50 — 3-Layer(bba) Sandwich
拓扑 Topology topology30 — Glucose Oxidase; domain 1
同源超家族 H-superfamily homologous superfamily70 — Swiveling domain of dehydratase reactivase alpha subunit
结构域编号 domain_id1nbwA04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id1nbwA05
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily140 — Nucleic acid-binding proteins
结构域编号 domain_id1nbwB00
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10150 — B12-dependent dehydatase associated subunit
结构域编号 domain_id1nbwC01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id1nbwC02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology470 — Ribosomal Protein L22; Chain A
同源超家族 H-superfamily homologous superfamily30 — Coenzyme B12-Dependent Enzyme linker domain
结构域编号 domain_id1nbwC03
类 Class class3 — Alpha Beta
架构 Architecture architecture50 — 3-Layer(bba) Sandwich
拓扑 Topology topology30 — Glucose Oxidase; domain 1
同源超家族 H-superfamily homologous superfamily70 — Swiveling domain of dehydratase reactivase alpha subunit
结构域编号 domain_id1nbwC04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id1nbwC05
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily140 — Nucleic acid-binding proteins
结构域编号 domain_id1nbwD00
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10150 — B12-dependent dehydatase associated subunit
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7. 引用文献 (1)