1nkt

CRYSTAL STRUCTURE OF THE SECA PROTEIN TRANSLOCATION ATPASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEX WITH ADPBS

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Preprotein translocase secA 1 subunit

Mycobacterium tuberculosis

UniProt P0A5Y8

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 2 MAGNESIUM ION × 2 ADENOSINE-5'-DIPHOSPHATE × 2 water × 2 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 4 MAGNESIUM ION × 4 ADENOSINE-5'-DIPHOSPHATE × 4 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 SECA1_MYCTU
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 32–922; UniProt 2–892 作者链 B; PDB构建体 32–922; UniProt 2–892

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1nkt
沉积日期 deposition_date2003-01-03
结构标题 titleCRYSTAL STRUCTURE OF THE SECA PROTEIN TRANSLOCATION ATPASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEX WITH ADPBS
关键词 keywords;PREPROTEIN TRANSLOCATION, ATPASE, TRANSMEMBRANE TRANSPORT, HELICASE-LIKE MOTOR DOMAIN, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, PROTEIN TRANSPORT ;; PROTEIN TRANSPORT
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1nkt__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1nkt__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1nkt__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)46.46 Å
Rg(电子密度)46.31 Å
总 Rg46.38 Å
原子数13316
残基数1672
排除体积235500 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1nkt__assembly_1__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1nkt__assembly_2__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 18 domains

SCOP 2.08 (10 domains)

结构域编号 domain_idd1nkta1
类 Class classa — All alpha proteins
折叠类型 Fold folda.162 — Pre-protein crosslinking domain of SecA
超家族 Superfamily superfamilya.162.1 — Pre-protein crosslinking domain of SecA
家族 Family familya.162.1.1 — Pre-protein crosslinking domain of SecA
结构域编号 domain_idd1nkta2
类 Class classa — All alpha proteins
折叠类型 Fold folda.172 — Helical scaffold and wing domains of SecA
超家族 Superfamily superfamilya.172.1 — Helical scaffold and wing domains of SecA
家族 Family familya.172.1.1 — Helical scaffold and wing domains of SecA
结构域编号 domain_idd1nkta3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.19 — Tandem AAA-ATPase domain
结构域编号 domain_idd1nkta4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.19 — Tandem AAA-ATPase domain
结构域编号 domain_idd1nkta5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1nktb1
类 Class classa — All alpha proteins
折叠类型 Fold folda.162 — Pre-protein crosslinking domain of SecA
超家族 Superfamily superfamilya.162.1 — Pre-protein crosslinking domain of SecA
家族 Family familya.162.1.1 — Pre-protein crosslinking domain of SecA
结构域编号 domain_idd1nktb2
类 Class classa — All alpha proteins
折叠类型 Fold folda.172 — Helical scaffold and wing domains of SecA
超家族 Superfamily superfamilya.172.1 — Helical scaffold and wing domains of SecA
家族 Family familya.172.1.1 — Helical scaffold and wing domains of SecA
结构域编号 domain_idd1nktb3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.19 — Tandem AAA-ATPase domain
结构域编号 domain_idd1nktb4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.19 — Tandem AAA-ATPase domain
结构域编号 domain_idd1nktb5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags

CATH v4.4 (8 domains)

结构域编号 domain_id1nktA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1nktA02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology1440 — Pre-protein croslinking domain of SecA
同源超家族 H-superfamily homologous superfamily10 — SecA, preprotein cross-linking domain
结构域编号 domain_id1nktA03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1nktA04
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3060 — Helical scaffold and wing domains of SecA
同源超家族 H-superfamily homologous superfamily10 — Helical scaffold and wing domains of SecA
结构域编号 domain_id1nktB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1nktB02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology1440 — Pre-protein croslinking domain of SecA
同源超家族 H-superfamily homologous superfamily10 — SecA, preprotein cross-linking domain
结构域编号 domain_id1nktB03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1nktB04
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3060 — Helical scaffold and wing domains of SecA
同源超家族 H-superfamily homologous superfamily10 — Helical scaffold and wing domains of SecA
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7. 引用文献 (1)