1ram

A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

PROTEIN (TRANSCRIPTION FACTOR NF-KB P65)

Mus musculus

UniProt Q04207

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–DNA 同源多聚体 蛋白 2 DNA 2 ;DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3') ; × 2 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 2 water × 4 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TF65_MOUSE
Isoform
PDB实体 2
链与序列区间 作者链 A; PDB构建体 1–273; UniProt 19–291 作者链 B; PDB构建体 1–273; UniProt 19–291

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id1ram
沉积日期 deposition_date1997-11-22
结构标题 titleA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
关键词 keywords;COMPLEX (TRANSCRIPTION FACTOR-DNA), DNA-BINDING, TRANSCRIPTION REGULATION, REL, ACTIVATOR, NUCLEAR PROTEIN, PHOSPHORYLATION, CONFORMATION, TRANSCRIPTION-DNA COMPLEX ;; TRANSCRIPTION/DNA
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1ram__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1ram__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1ram__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)29.72 Å
Rg(电子密度)30.27 Å
总 Rg30.52 Å
原子数5186
残基数586
排除体积88821 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1ram__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (4)

6. 折叠分类 (SCOP + CATH) 8 domains

SCOP 2.08 (4 domains)

结构域编号 domain_idd1rama1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.18 — E set domains
家族 Family familyb.1.18.1 — NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
结构域编号 domain_idd1rama2
类 Class classb — All beta proteins
折叠类型 Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
超家族 Superfamily superfamilyb.2.5 — p53-like transcription factors
家族 Family familyb.2.5.3 — Rel/Dorsal transcription factors, DNA-binding domain
结构域编号 domain_idd1ramb1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.18 — E set domains
家族 Family familyb.1.18.1 — NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
结构域编号 domain_idd1ramb2
类 Class classb — All beta proteins
折叠类型 Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
超家族 Superfamily superfamilyb.2.5 — p53-like transcription factors
家族 Family familyb.2.5.3 — Rel/Dorsal transcription factors, DNA-binding domain

CATH v4.4 (4 domains)

结构域编号 domain_id1ramA01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily340 — Rel homology domain (RHD), DNA-binding domain
结构域编号 domain_id1ramA02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id1ramB01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily340 — Rel homology domain (RHD), DNA-binding domain
结构域编号 domain_id1ramB02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins

7. 引用文献 (1)