1rqr

Crystal structure and mechanism of a bacterial fluorinating enzyme, product complex

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

;5'-fluoro-5'-deoxyadenosine synthase ;

Streptomyces cattleya

UniProt Q70GK9

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 6 5'-FLUORO-5'-DEOXYADENOSINE × 6 METHIONINE × 6 water × 6 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 6 5'-FLUORO-5'-DEOXYADENOSINE × 6 METHIONINE × 6 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q70GK9_STRCT
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–299; UniProt 1–299 作者链 B; PDB构建体 1–299; UniProt 1–299 作者链 C; PDB构建体 1–299; UniProt 1–299

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1rqr
沉积日期 deposition_date2003-12-07
结构标题 titleCrystal structure and mechanism of a bacterial fluorinating enzyme, product complex
关键词 keywordsfluorinase, central 7 stranded beta sheets, anti-parallel beta sheets, TRANSFERASE; TRANSFERASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1rqr__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1rqr__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1rqr__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)40.17 Å
Rg(电子密度)39.84 Å
总 Rg40.07 Å
原子数13488
残基数1716
排除体积239220 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1rqr__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1rqr__assembly_2__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 12 domains

SCOP 2.08 (6 domains)

结构域编号 domain_idd1rqra1
类 Class classb — All beta proteins
折叠类型 Fold foldb.141 — Bacterial fluorinating enzyme, C-terminal domain
超家族 Superfamily superfamilyb.141.1 — Bacterial fluorinating enzyme, C-terminal domain
家族 Family familyb.141.1.1 — Bacterial fluorinating enzyme, C-terminal domain
结构域编号 domain_idd1rqra2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.132 — Bacterial fluorinating enzyme, N-terminal domain
超家族 Superfamily superfamilyc.132.1 — Bacterial fluorinating enzyme, N-terminal domain
家族 Family familyc.132.1.1 — Bacterial fluorinating enzyme, N-terminal domain
结构域编号 domain_idd1rqrb1
类 Class classb — All beta proteins
折叠类型 Fold foldb.141 — Bacterial fluorinating enzyme, C-terminal domain
超家族 Superfamily superfamilyb.141.1 — Bacterial fluorinating enzyme, C-terminal domain
家族 Family familyb.141.1.1 — Bacterial fluorinating enzyme, C-terminal domain
结构域编号 domain_idd1rqrb2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.132 — Bacterial fluorinating enzyme, N-terminal domain
超家族 Superfamily superfamilyc.132.1 — Bacterial fluorinating enzyme, N-terminal domain
家族 Family familyc.132.1.1 — Bacterial fluorinating enzyme, N-terminal domain
结构域编号 domain_idd1rqrc1
类 Class classb — All beta proteins
折叠类型 Fold foldb.141 — Bacterial fluorinating enzyme, C-terminal domain
超家族 Superfamily superfamilyb.141.1 — Bacterial fluorinating enzyme, C-terminal domain
家族 Family familyb.141.1.1 — Bacterial fluorinating enzyme, C-terminal domain
结构域编号 domain_idd1rqrc2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.132 — Bacterial fluorinating enzyme, N-terminal domain
超家族 Superfamily superfamilyc.132.1 — Bacterial fluorinating enzyme, N-terminal domain
家族 Family familyc.132.1.1 — Bacterial fluorinating enzyme, N-terminal domain

CATH v4.4 (6 domains)

结构域编号 domain_id1rqrA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10790 — S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal
结构域编号 domain_id1rqrA02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily90 — Bacterial fluorinating enzyme like
结构域编号 domain_id1rqrB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10790 — S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal
结构域编号 domain_id1rqrB02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily90 — Bacterial fluorinating enzyme like
结构域编号 domain_id1rqrC01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10790 — S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal
结构域编号 domain_id1rqrC02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily90 — Bacterial fluorinating enzyme like
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7. 引用文献 (2)