1rvv

SYNTHASE/RIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

RIBOFLAVIN SYNTHASE

OrganismNot specified

UniProt P11998

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 30 PHOSPHATE ION × 30 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE × 30 water × 30 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 60 PHOSPHATE ION × 60 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE × 60 water × 60 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RISB_BACSU
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–154; UniProt 1–154 Author chain 2; PDBConstruct 1–154; UniProt 1–154 Author chain 3; PDBConstruct 1–154; UniProt 1–154 Author chain 4; PDBConstruct 1–154; UniProt 1–154 Author chain A; PDBConstruct 1–154; UniProt 1–154 Author chain B; PDBConstruct 1–154; UniProt 1–154 Author chain C; PDBConstruct 1–154; UniProt 1–154 Author chain D; PDBConstruct 1–154; UniProt 1–154 Author chain E; PDBConstruct 1–154; UniProt 1–154 Author chain F; PDBConstruct 1–154; UniProt 1–154 Author chain G; PDBConstruct 1–154; UniProt 1–154 Author chain H; PDBConstruct 1–154; UniProt 1–154 Author chain I; PDBConstruct 1–154; UniProt 1–154 Author chain J; PDBConstruct 1–154; UniProt 1–154 Author chain K; PDBConstruct 1–154; UniProt 1–154 Author chain L; PDBConstruct 1–154; UniProt 1–154 Author chain M; PDBConstruct 1–154; UniProt 1–154 Author chain N; PDBConstruct 1–154; UniProt 1–154 Author chain O; PDBConstruct 1–154; UniProt 1–154 Author chain P; PDBConstruct 1–154; UniProt 1–154 Author chain Q; PDBConstruct 1–154; UniProt 1–154 Author chain R; PDBConstruct 1–154; UniProt 1–154 Author chain S; PDBConstruct 1–154; UniProt 1–154 Author chain T; PDBConstruct 1–154; UniProt 1–154 Author chain U; PDBConstruct 1–154; UniProt 1–154 Author chain V; PDBConstruct 1–154; UniProt 1–154 Author chain W; PDBConstruct 1–154; UniProt 1–154 Author chain X; PDBConstruct 1–154; UniProt 1–154 Author chain Y; PDBConstruct 1–154; UniProt 1–154 Author chain Z; PDBConstruct 1–154; UniProt 1–154

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id1rvv
Deposition date deposition_date1995-10-25
Structure title titleSYNTHASE/RIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
Keywords keywordsRIBOFLAVIN SYNTHASE, TRANSFERASE, FLAVOPROTEIN; RIBOFLAVIN SYNTHASE
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1rvv__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1rvv__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1rvv__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)57.81 Å
Rg (electron density)57.48 Å
Total Rg57.68 Å
Atom count35100
Residues4620
Excluded volume623840 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1rvv__assembly_1__model_1 30-meric (30) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 1rvv__assembly_2__model_1 60-meric (60) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (4)

▼

6. Fold Classification (SCOP + CATH) 60 domains

SCOP 2.08 (30 domains)

Domain ID domain_idd1rvv1_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvv2_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvv3_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvv4_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvva_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvb_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvc_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvd_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvve_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvf_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvg_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvh_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvi_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvj_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvk_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvl_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvm_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvn_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvo_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvp_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvq_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvr_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvs_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvt_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvu_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvv_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvw_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvx_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvy_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase
Domain ID domain_idd1rvvz_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.16 — Lumazine synthase
Superfamily Superfamily superfamilyc.16.1 — Lumazine synthase
Family Family familyc.16.1.1 — Lumazine synthase

CATH v4.4 (30 domains)

Domain ID domain_id1rvv100
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvv200
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvv300
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvv400
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvA00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvB00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvC00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvD00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvE00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvF00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvG00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvH00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvI00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvJ00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvK00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvL00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvM00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvN00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvO00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvP00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvQ00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvR00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvS00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvT00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvU00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvV00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvW00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvX00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvY00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id1rvvZ00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
▶

7. Citations (1)