1t1s

Crystal Structure of the Reductoisomerase Complexed with a Bisphosphonate

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

1-deoxy-D-xylulose 5-phosphate reductoisomerase

Escherichia coli

UniProt P45568

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 2 SULFATE ION × 2 MAGNESIUM ION × 1 [(5-CHLORO-PYRIDIN-2-YLAMINO)-PHOSPHONO-METHYL]-PHOSPHONIC ACID × 2 water × 2 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 DXR_ECOLI
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 2–398; UniProt 2–398 作者链 B; PDB构建体 2–398; UniProt 2–398

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1t1s
沉积日期 deposition_date2004-04-17
结构标题 titleCrystal Structure of the Reductoisomerase Complexed with a Bisphosphonate
关键词 keywordsthree domains, oxidoreductase; OXIDOREDUCTASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1t1s__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1t1s__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1t1s__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)30.76 Å
Rg(电子密度)30.22 Å
总 Rg30.92 Å
原子数6097
残基数796
排除体积108450 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1t1s__assembly_1__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (5)

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6. 折叠分类 (SCOP + CATH) 14 domains

SCOP 2.08 (10 domains)

结构域编号 domain_idd1t1sa1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.3 — 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
家族 Family familya.69.3.1 — 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
结构域编号 domain_idd1t1sa2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.3 — Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
结构域编号 domain_idd1t1sa3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.3 — Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
结构域编号 domain_idd1t1sa4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.81 — FwdE/GAPDH domain-like
超家族 Superfamily superfamilyd.81.1 — Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
家族 Family familyd.81.1.3 — Dihydrodipicolinate reductase-like
结构域编号 domain_idd1t1sa5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1t1sb1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.3 — 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
家族 Family familya.69.3.1 — 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
结构域编号 domain_idd1t1sb2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.3 — Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
结构域编号 domain_idd1t1sb3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.3 — Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
结构域编号 domain_idd1t1sb4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.81 — FwdE/GAPDH domain-like
超家族 Superfamily superfamilyd.81.1 — Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
家族 Family familyd.81.1.3 — Dihydrodipicolinate reductase-like
结构域编号 domain_idd1t1sb5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags

CATH v4.4 (4 domains)

结构域编号 domain_id1t1sA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1t1sA03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1740 — Rna Polymerase Sigma Factor; Chain: A
同源超家族 H-superfamily homologous superfamily10 — RNA polymerase sigma factor, region 2, helix turn helix motif
结构域编号 domain_id1t1sB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1t1sB03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1740 — Rna Polymerase Sigma Factor; Chain: A
同源超家族 H-superfamily homologous superfamily10 — RNA polymerase sigma factor, region 2, helix turn helix motif
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7. 引用文献 (1)