1t60

Crystal structure of Type IV collagen NC1 domain from bovine lens capsule

Method: X-RAY DIFFRACTION D_max: 178.9 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	1t60
沉积日期 deposition_date	2004-05-05
结构标题 title	Crystal structure of Type IV collagen NC1 domain from bovine lens capsule
关键词 keywords	BASEMENT MEMBRANE, TYPE IV COLLAGEN, NC1 DOMAIN, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	61.70 Å
回转半径 Rg (电子) rg_electron	61.44 Å
零角强度 I(0) i0	5274940000.00
分子量 molecular_weight	597730.0 kDa
排除体积 excluded_volume	739100 Å³
包络体积 envelope_volume	933460 Å³
水化壳体积 shell_volume	120550 Å³
包络直径 envelope_diameter	197.3 Å
壳层 Rg shell_rg	68.53 Å
包络 Rg envelope_rg	60.13 Å
形状 Rg shape_rg	61.41 Å
总 Rg total_rg	61.66 Å
总原子数 total_atoms	41761
残基数 n_residues	5381
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	178.9 Å
Rg (实空间) rg_real	61.52 Å
Rg 误差 (实空间) rg_real_error	1.29 Å
I(0) (实空间) i0_real	5.2750e+09
I(0) 误差 (实空间) i0_real_error	1.0470e+08
Rg (倒空间) rg_reciprocal	61.80 Å
I(0) (倒空间) i0_reciprocal	5277000000.0000
解质量估计 total_estimate	0.8431
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	93.0 Å
偏度 Skewness skewness	0.120
峰度 Kurtosis kurtosis	-0.681
角度范围 angular_range	— – 0.1250 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	2625000000.0000
实空间数据点数 n_real_points	26
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.984; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.004

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (6)

Entity 1 polymer

描述 description	type iv collagen
分子量 formula_weight	25399.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	16

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A,B,D,E,G,H,J,K,M,N,P,Q,S,T,V,W
原子数 atom_count	44599

SVDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT

Entity 2 polymer

描述 description	type iv collagen
分子量 formula_weight	25083.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	8

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C,F,I,L,O,R,U,X

ISIGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKNL

Entity 3 non-polymer

描述 description	CHLORIDE ION
分子量 formula_weight	35.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	16

Entity 4 non-polymer

描述 description	(4S)-2-METHYL-2,4-PENTANEDIOL
分子量 formula_weight	118.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	9

Entity 5 non-polymer

描述 description	POTASSIUM ION
分子量 formula_weight	39.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	16

Entity 6 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	2838

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6. 折叠分类 (SCOP + CATH) 72 domains

SCOP 2.08 (48 domains)

结构域编号 domain_id	d1t60a1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60a2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60b1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60b2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60c1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60c2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60d1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60d2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60e1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60e2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60f1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60f2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60g1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60g2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60h1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60h2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60i1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60i2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60j1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60j2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60k1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60k2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60l1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60l2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60m1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60m2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60n1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60n2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60o1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60o2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60p1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60p2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60q1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60q2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60r1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60r2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60s1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60s2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60t1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60t2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60u1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60u2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60v1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60v2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60w1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60w2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60x1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

结构域编号 domain_id	d1t60x2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.169 — C-type lectin-like
超家族 Superfamily superfamily	d.169.1 — C-type lectin-like
家族 Family family	d.169.1.6 — Noncollagenous (NC1) domain of collagen IV

CATH v4.4 (24 domains)

结构域编号 domain_id	1t60A00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60B00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60C00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60D00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60E00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60F00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60G00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60H00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60I00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60J00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60K00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60L00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60M00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60N00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60O00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60P00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60Q00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60R00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60S00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60T00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60U00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60V00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60W00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

结构域编号 domain_id	1t60X00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	170 — Beta Complex
拓扑 Topology topology	240 — Noncollagenous (NC1) domain of collagen IV
同源超家族 H-superfamily homologous superfamily	10 — Collagen IV, non-collagenous

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7. 引用文献 (1)

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晶胞边长 a length_a	127.880 Å
晶胞边长 b length_b	140.129 Å
晶胞边长 c length_c	160.692 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	91.26 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	32

空间群 space_group	P 1 21 1
空间群编号 int_tables_number	4
晶系 crystal_system	—

分辨率 resolution	1.500 Å
最低分辨率 resolution_low	8.000 Å
R 因子 r_factor	0.1910
R_work r_work	0.1890
R_free r_free	0.2160

Crystal structure of Type IV collagen NC1 domain from bovine lens capsule

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (6)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 water

6. 折叠分类 (SCOP + CATH) 72 domains

SCOP 2.08 (48 domains)

CATH v4.4 (24 domains)

7. 引用文献 (1)

8. 文件与曲线 (10)

Files (7)

Curves (3)

fit	/app/data/saxs_computation/t6/1t60/1t60.fit
pddf	/app/data/pr_computation/t6/1t60/1t60.pr.out
profile	/app/data/saxs_computation/t6/1t60/1t60.dat