1t60

Crystal structure of Type IV collagen NC1 domain from bovine lens capsule

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

No usable UniProt protein identity is available for this entry.

The relationship tables retain this entry's assembly and composition data, but cross-PDB links for the same protein cannot be established reliably without a unified protein identity.

Assembly Composition of the Current Entry

Assembly Physical composition Protein state 蛋白 / DNA / RNA / 其他Polymer Data consistency
1 Protein heterocomplex Heteromer 6 / 0 / 0 / 0 Consistent with protein count
2 Protein heterocomplex Heteromer 6 / 0 / 0 / 0 Consistent with protein count
3 Protein heterocomplex Heteromer 6 / 0 / 0 / 0 Consistent with protein count
4 Protein heterocomplex Heteromer 6 / 0 / 0 / 0 Consistent with protein count

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1t60
Deposition date deposition_date2004-05-05
Structure title titleCrystal structure of Type IV collagen NC1 domain from bovine lens capsule
Keywords keywordsBASEMENT MEMBRANE, TYPE IV COLLAGEN, NC1 DOMAIN, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1t60__assembly_3__model_1

Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1t60__assembly_3__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1t60__assembly_3__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)30.72 Å
Rg (electron density)29.81 Å
Total Rg30.80 Å
Atom count10437
Residues1344
Excluded volume184810 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1t60__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 1t60__assembly_2__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 1t60__assembly_3__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 1t60__assembly_4__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (6)

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6. Fold Classification (SCOP + CATH) 72 domains

SCOP 2.08 (48 domains)

Domain ID domain_idd1t60a1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60a2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60b1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60b2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60c1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60c2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60d1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60d2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60e1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60e2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60f1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60f2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60g1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60g2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60h1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60h2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60i1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60i2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60j1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60j2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60k1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60k2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60l1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60l2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60m1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60m2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60n1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60n2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60o1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60o2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60p1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60p2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60q1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60q2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60r1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60r2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60s1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60s2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60t1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60t2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60u1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60u2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60v1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60v2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60w1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60w2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60x1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV
Domain ID domain_idd1t60x2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.169 — C-type lectin-like
Superfamily Superfamily superfamilyd.169.1 — C-type lectin-like
Family Family familyd.169.1.6 — Noncollagenous (NC1) domain of collagen IV

CATH v4.4 (24 domains)

Domain ID domain_id1t60A00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60B00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60C00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60D00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60E00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60F00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60G00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60H00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60I00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60J00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60K00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60L00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60M00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60N00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60O00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60P00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60Q00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60R00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60S00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60T00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60U00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60V00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60W00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
Domain ID domain_id1t60X00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology240 — Noncollagenous (NC1) domain of collagen IV
Homologous superfamily homologous superfamily10 — Collagen IV, non-collagenous
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7. Citations (1)