1up8

Recombinant vanadium-dependent bromoperoxidase from red algae Corallina pilulifera

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

VANADIUM-DEPENDENT BROMOPEROXIDASE 1

CORALLINA PILULIFERA

UniProt O81959

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 12 PHOSPHATE ION × 48 CALCIUM ION × 12 water × 12 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 O81959
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–598; UniProt 1–598 作者链 B; PDB构建体 1–598; UniProt 1–598 作者链 C; PDB构建体 1–598; UniProt 1–598 作者链 D; PDB构建体 1–598; UniProt 1–598

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1up8
沉积日期 deposition_date2003-09-29
结构标题 titleRecombinant vanadium-dependent bromoperoxidase from red algae Corallina pilulifera
关键词 keywordsHALOPEROXIDASE, VANADATE; HALOPEROXIDASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1up8__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1up8__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1up8__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)55.58 Å
Rg(电子密度)54.70 Å
总 Rg55.00 Å
原子数55512
残基数7164
排除体积982010 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1up8__assembly_1__model_1 dodecameric (12) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 8 domains

SCOP 2.08 (4 domains)

结构域编号 domain_idd1up8a_
类 Class classa — All alpha proteins
折叠类型 Fold folda.111 — Acid phosphatase/Vanadium-dependent haloperoxidase
超家族 Superfamily superfamilya.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase
家族 Family familya.111.1.2 — Haloperoxidase (bromoperoxidase)
结构域编号 domain_idd1up8b_
类 Class classa — All alpha proteins
折叠类型 Fold folda.111 — Acid phosphatase/Vanadium-dependent haloperoxidase
超家族 Superfamily superfamilya.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase
家族 Family familya.111.1.2 — Haloperoxidase (bromoperoxidase)
结构域编号 domain_idd1up8c_
类 Class classa — All alpha proteins
折叠类型 Fold folda.111 — Acid phosphatase/Vanadium-dependent haloperoxidase
超家族 Superfamily superfamilya.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase
家族 Family familya.111.1.2 — Haloperoxidase (bromoperoxidase)
结构域编号 domain_idd1up8d_
类 Class classa — All alpha proteins
折叠类型 Fold folda.111 — Acid phosphatase/Vanadium-dependent haloperoxidase
超家族 Superfamily superfamilya.111.1 — Acid phosphatase/Vanadium-dependent haloperoxidase
家族 Family familya.111.1.2 — Haloperoxidase (bromoperoxidase)

CATH v4.4 (4 domains)

结构域编号 domain_id1up8A00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology606 — Vanadium-containing Chloroperoxidase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Vanadium-containing Chloroperoxidase, domain 2
结构域编号 domain_id1up8B00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology606 — Vanadium-containing Chloroperoxidase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Vanadium-containing Chloroperoxidase, domain 2
结构域编号 domain_id1up8C00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology606 — Vanadium-containing Chloroperoxidase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Vanadium-containing Chloroperoxidase, domain 2
结构域编号 domain_id1up8D00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology606 — Vanadium-containing Chloroperoxidase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Vanadium-containing Chloroperoxidase, domain 2
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7. 引用文献 (3)