SAXSdb — 1usl

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1. Protein Identity and Related Structures Protein Identity & Related Structures

RIBOSE 5-PHOSPHATE ISOMERASE B

MYCOBACTERIUM TUBERCULOSIS

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 2	PHOSPHATE ION × 2 water × 2	Consistent with protein count
2	Protein homooligomer	Homooligomer	Protein 2	PHOSPHATE ION × 2 water × 2	Consistent with protein count
3	Protein homooligomer	Homooligomer	Protein 2	PHOSPHATE ION × 2 water × 2	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	O53192
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 9–170； UniProt 1–162 Author chain B； PDBConstruct 9–170； UniProt 1–162 Author chain C； PDBConstruct 9–170； UniProt 1–162 Author chain D； PDBConstruct 9–170； UniProt 1–162 Author chain E； PDBConstruct 9–170； UniProt 1–162

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	1usl
Deposition date deposition_date	2003-11-25
Structure title title	Structure Of Mycobacterium tuberculosis Ribose-5-Phosphate Isomerase, RpiB, Rv2465c, Complexed With Phosphate.
Keywords keywords	;ISOMERASE, PHOSPHOPENTOSE ISOMERASE B, PENTOSE PHOSPHATE PATHWAY, RV2465C, PHOSPHORIBOISOMERASE B, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL GENOMICS ;; ISOMERASE
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1usl__assembly_3__model_1

Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1usl__assembly_3__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

1usl__assembly_3__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	19.33 Å
Rg (electron density)	18.29 Å
Total Rg	19.19 Å
Atom count	2370
Residues	314
Excluded volume	41491 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`1usl__assembly_1__model_1`	dimeric （2）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`1usl__assembly_2__model_1`	dimeric （2）	Success	4.1.3-1-20251215 (887e7ef)	View Download
3	1	`1usl__assembly_3__model_1`	dimeric （2）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Description description	RIBOSE 5-PHOSPHATE ISOMERASE B
Molecular weight formula_weight	18330.7 kDa
EC 编号 ec_number	5.3.1.6
Source method src_method	man
Copy count entity_count	5

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E
Atom count atom_count	6519

MAHHHHHHMSGMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAQRHQRRIDILAEYERTHEAPPVPGAPA

Source Source

Source organism organism	MYCOBACTERIUM TUBERCULOSIS
NCBI taxonomy ID ncbi_taxonomy_id	83332
Host organism host_organism	ESCHERICHIA COLI

Entity 2 Entity 2 non-polymer

Description description	PHOSPHATE ION
Molecular weight formula_weight	95.0 kDa
Source method src_method	syn
Copy count entity_count	5

Entity 3 Entity 3 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	579

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6. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

Domain ID domain_id	d1usla_
Class class	c — Alpha and beta proteins (a/b)
Fold Fold fold	c.121 — Ribose/Galactose isomerase RpiB/AlsB
Superfamily Superfamily superfamily	c.121.1 — Ribose/Galactose isomerase RpiB/AlsB
Family Family family	c.121.1.1 — Ribose/Galactose isomerase RpiB/AlsB

Domain ID domain_id	d1uslb_
Class class	c — Alpha and beta proteins (a/b)
Fold Fold fold	c.121 — Ribose/Galactose isomerase RpiB/AlsB
Superfamily Superfamily superfamily	c.121.1 — Ribose/Galactose isomerase RpiB/AlsB
Family Family family	c.121.1.1 — Ribose/Galactose isomerase RpiB/AlsB

Domain ID domain_id	d1uslc_
Class class	c — Alpha and beta proteins (a/b)
Fold Fold fold	c.121 — Ribose/Galactose isomerase RpiB/AlsB
Superfamily Superfamily superfamily	c.121.1 — Ribose/Galactose isomerase RpiB/AlsB
Family Family family	c.121.1.1 — Ribose/Galactose isomerase RpiB/AlsB

Domain ID domain_id	d1usld_
Class class	c — Alpha and beta proteins (a/b)
Fold Fold fold	c.121 — Ribose/Galactose isomerase RpiB/AlsB
Superfamily Superfamily superfamily	c.121.1 — Ribose/Galactose isomerase RpiB/AlsB
Family Family family	c.121.1.1 — Ribose/Galactose isomerase RpiB/AlsB

Domain ID domain_id	d1usle_
Class class	c — Alpha and beta proteins (a/b)
Fold Fold fold	c.121 — Ribose/Galactose isomerase RpiB/AlsB
Superfamily Superfamily superfamily	c.121.1 — Ribose/Galactose isomerase RpiB/AlsB
Family Family family	c.121.1.1 — Ribose/Galactose isomerase RpiB/AlsB

CATH v4.4 (5 domains)

Domain ID domain_id	1uslA00
Class class	3 — Alpha Beta
Architecture architecture	40 — 3-Layer(aba) Sandwich
Topology topology	1400 — Ribose 5-phosphate Isomerase B; Chain: A,
Homologous superfamily homologous superfamily	10 — Sugar-phosphate isomerase, RpiB/LacA/LacB

Domain ID domain_id	1uslB00
Class class	3 — Alpha Beta
Architecture architecture	40 — 3-Layer(aba) Sandwich
Topology topology	1400 — Ribose 5-phosphate Isomerase B; Chain: A,
Homologous superfamily homologous superfamily	10 — Sugar-phosphate isomerase, RpiB/LacA/LacB

Domain ID domain_id	1uslC00
Class class	3 — Alpha Beta
Architecture architecture	40 — 3-Layer(aba) Sandwich
Topology topology	1400 — Ribose 5-phosphate Isomerase B; Chain: A,
Homologous superfamily homologous superfamily	10 — Sugar-phosphate isomerase, RpiB/LacA/LacB

Domain ID domain_id	1uslD00
Class class	3 — Alpha Beta
Architecture architecture	40 — 3-Layer(aba) Sandwich
Topology topology	1400 — Ribose 5-phosphate Isomerase B; Chain: A,
Homologous superfamily homologous superfamily	10 — Sugar-phosphate isomerase, RpiB/LacA/LacB

Domain ID domain_id	1uslE00
Class class	3 — Alpha Beta
Architecture architecture	40 — 3-Layer(aba) Sandwich
Topology topology	1400 — Ribose 5-phosphate Isomerase B; Chain: A,
Homologous superfamily homologous superfamily	10 — Sugar-phosphate isomerase, RpiB/LacA/LacB

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Unit-cell length a length_a	136.420 Å
Unit-cell length b length_b	102.390 Å
Unit-cell length c length_c	69.610 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	95.68 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	20

Space group space_group	C 1 2 1
Space-group number int_tables_number	5
Crystal system crystal_system	—

Resolution resolution	1.880 Å
Low-resolution limit resolution_low	81.650 Å
R factor r_factor	0.1702
R_work r_work	0.1685
R_free r_free	0.2018

Structure Of Mycobacterium tuberculosis Ribose-5-Phosphate Isomerase, RpiB, Rv2465c, Complexed With Phosphate.

1. Protein Identity and Related Structures Protein Identity & Related Structures

RIBOSE 5-PHOSPHATE ISOMERASE B

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1usl__assembly_3__model_1

1usl__assembly_3__model_1 | I(q)

1usl__assembly_3__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

Entity 3 Entity 3 water

6. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

CATH v4.4 (5 domains)

7. Citations (1)

Structure Of Mycobacterium tuberculosis Ribose-5-Phosphate Isomerase, RpiB, Rv2465c, Complexed With Phosphate.

1. Protein Identity and Related Structures Protein Identity & Related Structures

RIBOSE 5-PHOSPHATE ISOMERASE B

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1usl__assembly_3__model_1

1usl__assembly_3__model_1 | I(q)

1usl__assembly_3__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

Entity 3 Entity 3 water

6. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

CATH v4.4 (5 domains)

7. Citations (1)